PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g20590
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family M-type_MADS
Protein Properties Length: 279aa    MW: 32544.9 Da    PI: 8.9654
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g20590genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.21.6e-161154245
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
               ri n+  r +t+ kR++ + KKA E S+LC+++ ++i++++t  
  Tp6g20590 11 RIANDKTRITTYKKRKACLYKKAGEFSTLCGVQTCLIVYGPTKA 54
               89**************************************9975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-13261IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.984262IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-8424IPR002100Transcription factor, MADS-box
CDDcd002661.47E-23583No hitNo description
SuperFamilySSF554551.02E-17585IPR002100Transcription factor, MADS-box
PfamPF003191.4E-151153IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-82439IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-83960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MAQEKKVNLQ RIANDKTRIT TYKKRKACLY KKAGEFSTLC GVQTCLIVYG PTKATNELIS  60
EPEIWPMDET KARDIIRRYR DTASNSCRKE ADVETFINDI GKAKEMENNN RRVKNHKNKY  120
CRWEEKLDKC SQEQLRGIFD DVGNKLHEAI MRQNRSMIRA HHRAIETPIP QILMDPHYMS  180
QYIGDHQQQQ CLMFPNYNNM GIPLFSPHDD QIRTESNLVD NFADLGLNQG FNMMSKGNHG  240
TQYMQRQAPY YNLEPVVQRS ASFNVNQFAG YQAPQNIPW
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g20590
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018453520.11e-151PREDICTED: agamous-like MADS-box protein AGL82
SwissprotQ9FIM01e-124AGL82_ARATH; Agamous-like MADS-box protein AGL82
TrEMBLV4N9P71e-148V4N9P7_EUTSA; Uncharacterized protein
STRINGXP_006401028.11e-149(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59481947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.11e-123AGAMOUS-like 82
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]