PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g16640
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 234aa    MW: 25519.9 Da    PI: 8.8356
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g16640genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.34.9e-1275122454
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                ++  rE++RRdr+N++f eL  +l +    + +K +Ka+iL  Av+ +++L
  Tp6g16640  75 SKACREKQRRDRLNDKFMELGVILEPG---NPPKTDKAAILVDAVRMVSQL 122
                5678**********************8...78*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-1363137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.85E-969127No hitNo description
PROSITE profilePS5088813.371122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-1374145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-975122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-977128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd146860.00608137169No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MVSPENANWI CDLIDADYGS FTIQGSGFSW PVQQPIGVSS NSSVGVDGSA GNSEASKEPG  60
SKKRARCESS SATSSKACRE KQRRDRLNDK FMELGVILEP GNPPKTDKAA ILVDAVRMVS  120
QLRGEAQKLK DSNSSLQDKI KELKTEKNEL RDEKQRLKTE KEKLEQQLKA MNAPQPSFFP  180
APPMMPTAFA SAQGQAPGNK MVPVISYPGV AMWQFMPPAS VDTSQDHVLR PPVA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527260.0AK352726.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-C05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_200279.11e-169transcription factor ILR3
RefseqXP_002864351.11e-169hypothetical protein ARALYDRAFT_495549
RefseqXP_006280790.11e-168hypothetical protein CARUB_v10026758mg
SwissprotQ9FH371e-171ILR3_ARATH; Transcription factor ILR3
TrEMBLD7MUC31e-169D7MUC3_ARALL; Putative uncharacterized protein
TrEMBLR0GR791e-168R0GR79_9BRAS; Uncharacterized protein
STRINGAT5G54680.11e-169(Arabidopsis thaliana)
STRINGfgenesh2_kg.8__1365__AT5G54680.11e-169(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14372890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.11e-124bHLH family protein