PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g15390
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 366aa    MW: 40531.8 Da    PI: 5.3207
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g15390genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.4e-13102153155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                ++++h  +Er+RR+++N+ +  Lr+l+P     + k+ + a+i   +veYI++Lq
  Tp6g15390 102 QKMSHVTVERNRRKQMNEHLTVLRSLMPCF---YVKRGDQASIIGGVVEYISELQ 153
                6899*************************9...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.64E-1299157No hitNo description
SuperFamilySSF474591.83E-17100177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-13100156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.939101152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-10102153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-11107158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MQEIIPDFLE ECEFVDTSLA GDDLFAILES LEGAGEISPS AASTPKDGTT SSKELVKDKI  60
YETSRSKRNK RKRLETEKEE EEEEDGEEEG EGEEDNKQDG QQKMSHVTVE RNRRKQMNEH  120
LTVLRSLMPC FYVKRGDQAS IIGGVVEYIS ELQQVLQSLE AKKQRKTYAE VLSPRVVPSP  180
RPSPPVLSPR KPPLSPRLNH HQIHHHLLLP PISPRTPQPT SPYRPHPPQL PLIPQHPLRS  240
YSSLAACSSL GDPPPYSPAS SSSSPSVSSN HESSVINELV ANSKSALADV EVKFSGANVL  300
LKTVSHKIPG QVMKIIAALE DLALEILQVN INTVDETMLN SFTIKIGIEC QLSAEELAQQ  360
IQQTFC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6304980.0AJ630498.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At5g53210.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401728.10.0hypothetical protein EUTSA_v10013877mg
SwissprotQ700C70.0SPCH_ARATH; Transcription factor SPEECHLESS
TrEMBLE4MXG20.0E4MXG2_EUTHA; mRNA, clone: RTFL01-22-L21
TrEMBLV4NBA70.0V4NBA7_EUTSA; Uncharacterized protein
STRINGBra022638.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78952740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.11e-155bHLH family protein