PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g04880
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family M-type_MADS
Protein Properties Length: 298aa    MW: 33802.2 Da    PI: 8.8033
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g04880genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.72.4e-161050242
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
               +i n+s r+ tf kR++g++KK +ELS+LC++ ++ ii+++
  Tp6g04880 10 FIPNDSSRKATFKKRKKGLIKKVNELSTLCGITACAIIYGP 50
               799************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-22160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.61149IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.11E-24185IPR002100Transcription factor, MADS-box
CDDcd002662.97E-23285No hitNo description
PRINTSPR004042.7E-8323IPR002100Transcription factor, MADS-box
PfamPF003192.6E-161051IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MTRKKVKLAF IPNDSSRKAT FKKRKKGLIK KVNELSTLCG ITACAIIYGP YDSNPEVWPS  60
NLGVQRIVSE FRTLPEMDQH KKMVDQETFL RQRIAKASEH LKRQRKDNRE TEMTEVMFQC  120
LVGNLGMFHL NIMNLNDLGY VIDQYLKDVN RRIEILGNSG LELGESSNAA VAATTSEGIG  180
SLAIVAATTA PAATIQLHHH QQEQFRHHVA PHVGLYGQPL NLNLNHNQNQ HQWLMEMSYA  240
AEQMGFPFMD DNHHHHHHQQ QQQLPGDSST APATVSSSST WFRQGFESER SHSDKTKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAFIPNDSSRKATFKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g04880
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018454705.11e-136PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-110AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLM4DPP91e-130M4DPP9_BRARP; Uncharacterized protein
STRINGBra018490.1-P1e-131(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-107AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]