PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g04860
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family M-type_MADS
Protein Properties Length: 111aa    MW: 12856.1 Da    PI: 10.4875
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g04860genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.76.4e-136351544
               HHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
     SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstg 44
               kR++g++KK +ELS+LC++ ++ ii+s+++
  Tp6g04860  6 KRKKGLIKKVNELSTLCGITACAIIYSPND 35
               9**************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.629134IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-7143IPR002100Transcription factor, MADS-box
PfamPF003193.8E-12535IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-18578IPR002100Transcription factor, MADS-box
CDDcd002663.57E-161568No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MTRKKKRKKG LIKKVNELST LCGITACAII YSPNDSNPEV WPSNSGVQRI VSEFRTLLEM  60
DQHKKMVDQE TFLRQRIAKA SKHLKRQRKD NTEIEMTEVM FQCLVGNMGM L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
128RKKKRKK
248KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g04860
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010464144.15e-59PREDICTED: agamous-like MADS-box protein AGL80
RefseqXP_010486066.16e-59PREDICTED: agamous-like MADS-box protein AGL80
RefseqXP_019100177.14e-59PREDICTED: agamous-like MADS-box protein AGL80 isoform X2
RefseqXP_023642368.13e-60agamous-like MADS-box protein AGL80 isoform X2
SwissprotQ9FJK32e-55AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A078H7X31e-57A0A078H7X3_BRANA; BnaC02g26190D protein
TrEMBLR0G6N65e-57R0G6N6_9BRAS; Uncharacterized protein
STRINGXP_010464144.12e-58(Camelina sativa)
STRINGXP_010486066.12e-58(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-57AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]