PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g02500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 310aa    MW: 33058.3 Da    PI: 6.4239
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g02500genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.7e-09157201554
                HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                h+++Er RR+ri +++  L+el+P+ +      K + a++  + v+Y+k L
  Tp6g02500 157 HSIAERLRRERIAERIRALQELVPTvN------KTDRAAMIDEIVDYVKFL 201
                99***********************55......9**************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-14150211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.802152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-14154211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-6157201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-10158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MASNNPHENL SDQTPSDDFF EHILGLPNFS ASSAAGLSGV DGGLGGGAPP MMLQLGSGDE  60
GSHMAGLGGS GPTGFHNQMF PLGLSLDQGK GPGFLRPEGG HGSGKRFSDD VVDNRCSSMK  120
PVFHGQPMQQ PAPAAPHQPT SIRPRVRARR GQATDPHSIA ERLRRERIAE RIRALQELVP  180
TVNKTDRAAM IDEIVDYVKF LRLQVKVLSM SRLGGAGAVA PLVTDMPLSS SVEDETSDGG  240
RTPQPAWEKW SNDGTERQVA KLMEENVGAA MQLLQSKALC MMPISLAMAI YHSQPPDTSS  300
VVKPETNPPP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161166RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527650.0AK352765.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-G01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396471.10.0hypothetical protein EUTSA_v10028824mg
RefseqXP_006396472.10.0hypothetical protein EUTSA_v10028824mg
SwissprotO227680.0UNE12_ARATH; Transcription factor UNE12
TrEMBLV4L2M50.0V4L2M5_EUTSA; Uncharacterized protein
STRINGfgenesh2_kg.6__3435__AT4G02590.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-174bHLH family protein