PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g29680
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 93aa    MW: 10596.9 Da    PI: 9.3967
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g29680genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.71.4e-1020611454
               HHHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS
        HLH 14 driNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54
               d+iN+ + +L++llP++  + +s K+s a +L+++++YI++L
  Tp5g29680 20 DQINDLITKLQQLLPELRdSRRSDKVSAARVLQETCNYIRNL 61
               79**************55599*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.062661IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-101980IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.54E-62065No hitNo description
PfamPF000107.2E-82061IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.11E-112080IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:0010086Biological Processembryonic root morphogenesis
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MSGRRSRSRQ SSGTSRISED QINDLITKLQ QLLPELRDSR RSDKVSAARV LQETCNYIRN  60
LHREVDDLSE RLSELLANTD TAQAALIRSL LTQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0030461e-118BT003046.1 Arabidopsis thaliana At1g74500 gene, complete cds.
GenBankAY0882861e-118AY088286.1 Arabidopsis thaliana clone 519 mRNA, complete sequence.
GenBankAK2273951e-118AK227395.1 Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL14-05-N07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013681754.13e-56PREDICTED: transcription factor PRE3-like
RefseqXP_013591036.13e-56PREDICTED: transcription factor PRE3-like
SwissprotQ9CA642e-47PRE3_ARATH; Transcription factor PRE3
TrEMBLA0A087HID92e-58A0A087HID9_ARAAL; Uncharacterized protein
STRINGBra003797.1-P1e-54(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74500.18e-47activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1