PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g29030
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 262aa    MW: 29486.9 Da    PI: 7.3456
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g29030genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.79.8e-09158205455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR +iN+++  L++++P +     k +  a++L + ++Y++sLq
  Tp5g29030 158 SHSLAERVRRGKINERLKCLQDIVPGC----YKAMGMATMLDEIINYVQSLQ 205
                8*************************8....355999*************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.35E-9152209No hitNo description
SuperFamilySSF474591.83E-16152222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.389154204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-16154216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-6158205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-9160210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MANLSSDCQT FTMDHDPITQ LAQLNNTLHQ FQTMFAPPFS SSLDSLFFHQ QLPYHFPENI  60
IHHQETFLPS NIHNNDESSS RLDTKKRKTL LASVSTSENS VSDQTLSTTS SAQLSINGNI  120
LTKTSSSRRG KRTSKNREEE KEREVVHVRA KRGQATDSHS LAERVRRGKI NERLKCLQDI  180
VPGCYKAMGM ATMLDEIINY VQSLQNQVEF LSMKLTAASS YYDFNSEADA VDSMQKAKAR  240
EAVEMGQGRD GSTVFHSSSW TL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0060550.0BT006055.1 Arabidopsis thaliana clone U51368 putative helix-loop-helix DNA-binding protein (At1g73830) mRNA, complete cds.
GenBankAK1187810.0AK118781.1 Arabidopsis thaliana At1g73830 mRNA for putative bHLH transcription factor (bHLH050), complete cds, clone: RAFL21-11-M10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590557.11e-157PREDICTED: transcription factor BEE 3
RefseqXP_013705420.11e-157PREDICTED: transcription factor BEE 3-like
SwissprotQ8GWK71e-148BEE3_ARATH; Transcription factor BEE 3
TrEMBLA0A078C8B71e-157A0A078C8B7_BRANA; BnaC06g34680D protein
STRINGfgenesh2_kg.2__1650__AT1G73830.11e-156(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29972765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.11e-112BR enhanced expression 3