PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g27080
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family TCP
Protein Properties Length: 396aa    MW: 41570 Da    PI: 8.9953
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g27080genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.17.6e-3970167489
        TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas......nsssg.......k 89 
                 k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++  +++ +  +s      ++  +       +
  Tp5g27080  70 VKKPSKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGTIPANFStLNATLRGGGStifaqpSK--SsssplsfH 167
                5899**********************************************************999997774222222222222221111..112233321 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.1E-3574190IPR005333Transcription factor, TCP
PROSITE profilePS5136928.03174128IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MEIRTNHTSH DRQRDAVATA LTAEAGLQLN SNENPSPGGS VPFVGGISGS TSSSTSTSSG  60
TALAVVKSAV KKPSKDRHTK VDGRGRRIRM PAMCAARVFQ LTRELGHKSD GETIEWLLQQ  120
AEPAIIASTG TGTIPANFST LNATLRGGGS TIFAQPSKSS SSPLSFHSTG MSLYEDSNGT  180
NGSSSSAAVD PSRKLLNAAT AAQNAAVFGF HHQIYPPIMS TERNPTNLAK PYREDYFKES  240
EPSGSSQKPG QFQDQELGPG PGMGRGTANV VPQPMWAVAP GTTNGGSAFW MLPMSGSGGR  300
EQMQQQPAHQ MWAFNPGNYP VGTGRVVTAP MGSMMLGGQQ LGLGVAESNM AAAMRGSRGG  360
DGLAMTLDQH QHQHHQQHQE PSQTQASENG GGDDKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00228DAPTransfer from AT1G72010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g27080
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532390.0AK353239.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-27-J11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301977.10.0transcription factor TCP22
SwissprotQ9C7G40.0TCP22_ARATH; Transcription factor TCP22
TrEMBLA0A1J3JGG00.0A0A1J3JGG0_NOCCA; Transcription factor TCP22
STRINGBostr.10273s0152.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70532441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.11e-152TCP family protein
Publications ? help Back to Top
  1. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  2. Dong H, et al.
    Ubiquitylation activates a peptidase that promotes cleavage and destabilization of its activating E3 ligases and diverse growth regulatory proteins to limit cell proliferation in Arabidopsis.
    Genes Dev., 2017. 31(2): p. 197-208
    [PMID:28167503]