PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g23280
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 192aa    MW: 22358.2 Da    PI: 7.6152
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g23280genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.31.1e-0784126855
                HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +E++RR+ i+++ + L+e+ P++      K + a+ Le+ veYIksL+
  Tp5g23280  84 MEKKRRQLIRDKVDILQEMTPNC-----AKSDLATKLERIVEYIKSLK 126
                8*********************8.....69999999**********95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.5E-1074136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.34176125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-1180142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.15E-781129No hitNo description
SMARTSM003535.5E-582131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-584125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MEINDRNEEL YSLSEIFSSL SSEDQNELNP LQEIFGAHSS SSTLSFSEPK DVTKNSDQRD  60
KRDHCNQSNH KPKRQRSMEY RVLMEKKRRQ LIRDKVDILQ EMTPNCAKSD LATKLERIVE  120
YIKSLKHQRD IMSKAYTEPV GYMSPFYGAQ APSMSPYNLP WGYYTPGIPM MPQQNIPSST  180
QFHQVWILPT SF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17075KPKRQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619093.11e-101PREDICTED: transcription factor bHLH109 isoform X2
SwissprotQ5XVH01e-58BH109_ARATH; Transcription factor bHLH109
TrEMBLA0A0D3ANW81e-101A0A0D3ANW8_BRAOL; Uncharacterized protein
STRINGBra033950.1-P1e-88(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150321417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68240.11e-52bHLH family protein