PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g21530
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 313aa    MW: 33674.8 Da    PI: 6.1254
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g21530genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.4e-10225266955
                HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 ++RR+ri +++  L+el+P+      +K++ +++LekA+ Y+k Lq
  Tp5g21530 225 AKNRRERISERLKILQELVPNG-----TKVDLVTMLEKAISYVKFLQ 266
                69******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.32216265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-12217273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.61E-12218270No hitNo description
SuperFamilySSF474592.09E-13218276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-12222271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-7225266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048766Biological Processroot hair initiation
GO:0005739Cellular Componentmitochondrion
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MALVNDHPNE PNYISKQNSS SSEDLSSPEN YGLDHPEAAY AGGGGGGGSA SSSSTMNSDH  60
HQENHQGFVF YPSGEAVEDQ NSLLDFNGSS FLNFDHNDHH ESFPPPTISC GGGGGGGGGG  120
FSFLEGNNMS YGFTNWSQHH MDIISPRPIE TPGTNQDHKD WLYSDSTVVT TGSRRESISP  180
KSAGNKRSYT GESTQTSSKK LISGSNGKAK PKPATSPKDP QSLAAKNRRE RISERLKILQ  240
ELVPNGTKVD LVTMLEKAIS YVKFLQVQVK VLATDEFWPA QGGKAPDISQ VKDAIDAILS  300
SSQRDRNSNL ITN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013741462.10.0PREDICTED: transcription factor bHLH83-like
SwissprotQ9C7071e-157BH083_ARATH; Transcription factor bHLH83
TrEMBLA0A078J8Q40.0A0A078J8Q4_BRANA; BnaCnng38450D protein
STRINGBra019708.1-P1e-178(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42602854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.11e-153ROOT HAIR DEFECTIVE6