PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g18130
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C3H
Protein Properties Length: 149aa    MW: 16309.7 Da    PI: 8.7172
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g18130genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.75.3e-10108129425
                ---SGGGGTS--TTTTT-SS-S CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                 +C f+ ++G+Ck+G++CkF H
  Tp5g18130 108 QRCTFYVQYGFCKFGSTCKFDH 129
                68******************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.967105132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-6105129IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-7108129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-4110129IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MIVKVCSPHM ENRCGDLGGV VKRSQRDQAP LSPAPSSPPQ NVVGATSLYG LIQLSSTTPS  60
LPVVYPSLSF PTGVVQKEQT FPERPGKPER QYYLKKQEIV SLEHIGVQRC TFYVQYGFCK  120
FGSTCKFDHL SASPLADAPV APYPLSTHI
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g18130
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001323622.11e-42Zinc finger C-x8-C-x5-C-x3-H type family protein
RefseqXP_020882914.12e-42zinc finger CCCH domain-containing protein 32 isoform X2
SwissprotQ84W917e-43C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A1P8AXN63e-41A0A1P8AXN6_ARATH; Zinc finger C-x8-C-x5-C-x3-H type family protein
TrEMBLD7LHC97e-41D7LHC9_ARALL; Zinc finger (CCCH-type) family protein
TrEMBLR0HSN85e-41R0HSN8_9BRAS; Uncharacterized protein
STRINGscaffold_403761.11e-41(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.22e-43C3H family protein