PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g16170
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family TCP
Protein Properties Length: 187aa    MW: 20877.3 Da    PI: 7.2723
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g16170genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP103.53.5e-3251623114
        TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................................ssss 69 
                 k ++++++h kv+gRdRR+Rl+++ca ++F L++eLGf++d++t+ WLlq+a+pai ++tg                                  s   
  Tp5g16170   5 QKATSSKDRHLKVEGRDRRIRLPVSCASQLFHLTEELGFKTDGETVGWLLQNAEPAIVAATGHglnitsndvmiddpsntshtyiryhnnynctinS--- 101
                57899**********************************************************9988888888877654444444333333321110... PP

        TCP  70 aseceaesssssasnsssg................................kaaksaa.kskksqksaasalnlakes 114
                                s++                                + ++s + + + +q++++ +l+++ e 
  Tp5g16170 102 ----------------SIHrsdgsggvshqrqvlpvatvtgpstfttkdvnQ-KQSVMlPASMPQQQPQPQLQPQFEF 162
                ................111222233344445556677777666666666541.2222223333333333222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-278127IPR005333Transcription factor, TCP
PROSITE profilePS5136924.7251064IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MENPQKATSS KDRHLKVEGR DRRIRLPVSC ASQLFHLTEE LGFKTDGETV GWLLQNAEPA  60
IVAATGHGLN ITSNDVMIDD PSNTSHTYIR YHNNYNCTIN SSIHRSDGSG GVSHQRQVLP  120
VATVTGPSTF TTKDVNQKQS VMLPASMPQQ QPQPQLQPQF EFAKEEMAAA EQAYVHYLKM  180
KEKNGWN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00390DAPTransfer from AT3G45150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002875712.11e-41hypothetical protein ARALYDRAFT_905655
SwissprotQ9M1U46e-35TCP16_ARATH; Transcription factor TCP16
TrEMBLD7LNL11e-41D7LNL1_ARALL; Putative uncharacterized protein
STRINGscaffold_501359.14e-41(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157501016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45150.12e-36TCP domain protein 16