PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g14290
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family TCP
Protein Properties Length: 486aa    MW: 52246.8 Da    PI: 7.6131
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g14290genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP134.41e-411152942133
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................................ssss 69 
                + k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+++++tgt                                ++s+
  Tp5g14290 115 PLKRASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTgtipanftslnislrssgssmslpshfrnaasTFSP 214
                57999***********************************************************888888888888888888877777777766665555 PP

        TCP  70 asec....eaesssssasnsssg..............kaaksaa.kskksqksaasalnlakesrakararare.rtrekmrik 133
                ++ +     +++++++++    +              +a +s+  ++ ++ ++++s+ln+++ ++++ +++++e ++++k r++
  Tp5g14290 215 NNIFspslLQQQQQQQQQ----QrsgggflhhhhlqgRATTSSLfPGIDNFTPTTSFLNFHNPTKQEGDQESEElSSEKKRRLQ 294
                544444433333333333....12346899999999988888888*****************9999999999996666666555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.2E-40120296IPR005333Transcription factor, TCP
PROSITE profilePS5136927.505121175IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0010029Biological Processregulation of seed germination
GO:0010229Biological Processinflorescence development
GO:0031347Biological Processregulation of defense response
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MQKPTSSLLN VIMDGGDSVG GGGGDDHNRH LHHHHRPTFP FQLLGKRDPD DNQQQQQPSP  60
SSSSSLFSLH QHQQLSQSQP QPQSQSQPKP QTQTTQKELQ ITQEESAVAV AKKPPLKRAS  120
TKDRHTKVDG RGRRIRMPAL CAARVFQLTR ELGHKSDGET IEWLLQQAEP SVIAATGTGT  180
IPANFTSLNI SLRSSGSSMS LPSHFRNAAS TFSPNNIFSP SLLQQQQQQQ QQQRSGGGFL  240
HHHHLQGRAT TSSLFPGIDN FTPTTSFLNF HNPTKQEGDQ ESEELSSEKK RRLQTTSDLH  300
QHDQIGGYTL QSSNSGSTAT TAQIPGNFWM VAAAAAAAGG GNNQTGGSVG NSGGGGGGGE  360
PVWTFPSINT AAAALYRSSV SGVSGGAVSS GLHFMNFAAP MAFLTGQQLA TSSNHEINEE  420
NNEGGRSDGG DHHNTQRHHH HHHQQQQQHH HNILSGLNQY GRQVSGESQA SDSLGGGEED  480
PKNKNT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00396DAPTransfer from AT3G47620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g14290
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533010.0AK353301.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-40-G20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009149892.10.0PREDICTED: transcription factor TCP14
RefseqXP_013642659.10.0transcription factor TCP14
RefseqXP_022543554.10.0transcription factor TCP14-like
SwissprotQ93Z000.0TCP14_ARATH; Transcription factor TCP14
TrEMBLA0A1J3D5660.0A0A1J3D566_NOCCA; Transcription factor TCP14 (Fragment)
STRINGBo3g134720.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39152757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47620.11e-146TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14
Publications ? help Back to Top
  1. Steiner E, et al.
    The Putative O-Linked N-Acetylglucosamine Transferase SPINDLY Inhibits Class I TCP Proteolysis to Promote Sensitivity to Cytokinin.
    Plant Physiol., 2016. 171(2): p. 1485-94
    [PMID:27208284]
  2. Yang L, et al.
    Pseudomonas syringae Type III Effector HopBB1 Promotes Host Transcriptional Repressor Degradation to Regulate Phytohormone Responses and Virulence.
    Cell Host Microbe, 2017. 21(2): p. 156-168
    [PMID:28132837]
  3. Zhang N, et al.
    MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
    Plant J., 2018. 93(1): p. 66-78
    [PMID:29086441]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]