PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g07990
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family SRS
Protein Properties Length: 251aa    MW: 27289.8 Da    PI: 10.3375
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g07990genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702170.21.1e-52952414154
     DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkelets 103
                 ++ C+dCGn+akk+C +eRCRtCCksrg++CathvkstWvp++  +++++ ++      ++s++++++k+ + +  k ++ +s + +s+++s++e++++
  Tp5g07990  95 EEKVCRDCGNRAKKECLFERCRTCCKSRGYNCATHVKSTWVPSSSSSSHHRSTSR-----TSSSSSDRKKKLKIS-DKPTNPASVSFVSTTTSRQETSFK 188
                6789***************************************998886433322.....222233333333332.333333444555666666666666 PP

     DUF702 104 s.lPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154
                + lP +++++avf+++rv+++++ +++e++Yq++v+i+GhvfkG+L+++G+++
  Tp5g07990 189 EgLPGKIEAPAVFKRTRVTAISNnEQAEIGYQATVTISGHVFKGFLHYHGVDH 241
                66*******************9868899***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051424.0E-4797240IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.5E-2698138IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016244.7E-28191239IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MAKKPIYAVA NPPSLLSWPP QQQPSSSSTP FSVAANIPDH SSVSAAGIST PDYMLGLRNI  60
ILLPPPAPQI TQLSPSPVNF AAVEGNNRSR NNNVEEKVCR DCGNRAKKEC LFERCRTCCK  120
SRGYNCATHV KSTWVPSSSS SSHHRSTSRT SSSSSDRKKK LKISDKPTNP ASVSFVSTTT  180
SRQETSFKEG LPGKIEAPAV FKRTRVTAIS NNEQAEIGYQ ATVTISGHVF KGFLHYHGVD  240
HNKAFPCLSK K
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM) (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g07990
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4468892e-74AF446889.1 Arabidopsis thaliana AT3g54430/T12E18_120 mRNA, complete cds.
GenBankAY0526752e-74AY052675.1 Arabidopsis thaliana AT3g54430/T12E18_120 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116129.21e-119PREDICTED: protein SHI RELATED SEQUENCE 6-like
SwissprotQ9M2U46e-98SRS6_ARATH; Protein SHI RELATED SEQUENCE 6
TrEMBLM4CS801e-118M4CS80_BRARP; Uncharacterized protein
STRINGBra007072.1-P1e-118(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM119592332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54430.13e-98SHI-related sequence 6
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]