PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g04140
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family WRKY
Protein Properties Length: 276aa    MW: 30644.6 Da    PI: 4.8708
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g04140genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY932.2e-2970128259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+ + itY  +Hnh+
  Tp5g04140  70 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPSKLMITYACDHNHP 128
                69*************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-3061130IPR003657WRKY domain
PROSITE profilePS5081131.50264130IPR003657WRKY domain
SuperFamilySSF1182902.48E-2565130IPR003657WRKY domain
SMARTSM007746.4E-3469129IPR003657WRKY domain
PfamPF031061.1E-2471128IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MHRRGIQESD DEEDETYNDV VPESPSSCED SKISKPTPKK SRRNVEKRVV SVPIADVEGS  60
KSRGEVYPPS DSWAWRKYGQ KPIKGSPYPR GYYRCSSSKG CPARKQVERS RVDPSKLMIT  120
YACDHNHPFP SAANNKSHHH RTSTVVLKSA KKEENMEEDE EEEATVVAEE PVGLDLSHVD  180
SPLLLGGCYS EIGEFGWFYD ASISSSSGSS SIYGGNFLDV TLERGFSAGE EEDESLFGDL  240
GDLPDCASVF RRGTVATEEQ HRRCDFGAIP FCDSSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2lex_A3e-1759131778Probable WRKY transcription factor 4
1wj2_A3e-1759131778Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC2465840.0KC246584.1 Brassica napus WRKY transcription factor 69.2 (WRKY69.2) mRNA, complete cds.
GenBankKC2465830.0KC246583.1 Brassica napus WRKY transcription factor 69.1 (WRKY69.2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402757.11e-169hypothetical protein EUTSA_v10006157mg
SwissprotQ93WV51e-166WRK69_ARATH; Probable WRKY transcription factor 69
TrEMBLV4L1Q11e-169V4L1Q1_EUTSA; Uncharacterized protein
STRINGfgenesh2_kg.5__2317__AT3G58710.21e-166(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM124781930
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.11e-164WRKY DNA-binding protein 69