PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g03920
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 440aa    MW: 49393.1 Da    PI: 6.5143
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g03920genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH573.5e-18263309455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 hn  ErrRRdriN+++  L+el+P++      K +Ka+iL +A++Y+ksLq
  Tp5g03920 263 VHNLSERRRRDRINERMKALQELIPHC-----SKTDKASILDEAIDYLKSLQ 309
                6*************************9.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-21257318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088819.2259308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.64E-10262313No hitNo description
PfamPF000101.7E-15263309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-22263318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-18265314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0009693Biological Processethylene biosynthetic process
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MEQLFPDWNF EDNFHMSTNK RSIRPEDELV ELLWRDGQVV LQSQVRREPS IQVQTHKHEQ  60
TLGKSNNIFL DNQEAIRKPN HVPEDQETVS WIQYPPEDVV DPFESEFSSH FFSSIDHLDG  120
PDRPQKPPTI EETVKHEAQP MAPPKFRSSV ATVGPSHCGS NQSTNDHQMT HPPVSMSDRS  180
KNVEERLDTS SGGSSGCSYG RNSKETESGR SVTISRKRKH VMETDQESVS QSDVRLMSTD  240
DQAMGNKSSQ RSGSTRRSRA AEVHNLSERR RRDRINERMK ALQELIPHCS KTDKASILDE  300
AIDYLKSLQM QLQVMWMGSG MAAAAAAAAT PMMFPGVQSS PYINQMAMQS QMQLPQFPVI  360
NRSAAQNHPG LACQNPVQLQ MQAQNQILSE QLARYMSGFP QMPATTQPVQ QQPMDMSRFG  420
SSVGQQSQLS APATTDSLRG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1267272ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00082ChIP-seqTransfer from AT3G59060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534280.0AK353428.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-36-L20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002878258.10.0phytochrome-interacting factor 5
SwissprotQ84LH80.0PIF5_ARATH; Transcription factor PIF5
TrEMBLE4MY310.0E4MY31_EUTHA; mRNA, clone: RTFL01-36-L20
STRINGscaffold_503108.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34682561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.10.0phytochrome interacting factor 3-like 6