PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g01280
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 340aa    MW: 37997.5 Da    PI: 4.8935
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g01280genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.42.2e-07151195655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                n  Er+ R++iN+++ +L++llP++      K +  + L +A++Y+  Lq
  Tp5g01280 151 NSPERKQRNDINKKMRTLQDLLPNS-----HKDDNESLLDEAINYMTTLQ 195
                677*********************8.....699*************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.14E-8141199No hitNo description
Gene3DG3DSA:4.10.280.103.1E-12142207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.192145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-13146215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-6151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-5151195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010017Biological Processred or far-red light signaling pathway
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MELVFENGQI LAKSQRSNGF SLQNQRMKSI MDLYEAEYNE DFKKSIRGGT SDGSIKSLGH  60
TQTLEATSST RMVVDYENRN DIEFIPPDEQ SVVAERSVEL GFDSTDFTED SEGSTFLSSS  120
LDDESDDARP RVPARTRKSL VKRRRSKELY NSPERKQRND INKKMRTLQD LLPNSHKDDN  180
ESLLDEAINY MTTLQLQVQM MAMSNRFVTP ATMLPLGPHY SQMGLETGMQ MGVPQFLPPP  240
ILGAGLPGIS NSADMLRFLN HHGLMPMQNS ALFTPTENYF PQSVRPSCAA FPNQVPNSTS  300
LSNVDDARTD GGSLSDTDHC YLLNHRLVIL QVSSENTGAI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590173.11e-163PREDICTED: LOW QUALITY PROTEIN: transcription factor PIF6-like
SwissprotQ8L5W71e-154PIF6_ARATH; Transcription factor PIF6
TrEMBLA0A078JI671e-165A0A078JI67_BRANA; BnaC06g42980D protein
TrEMBLA0A0D3CVA61e-165A0A0D3CVA6_BRAOL; Uncharacterized protein
STRINGBra003483.1-P1e-158(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134231425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62090.11e-145phytochrome interacting factor 3-like 2