PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g29610
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C3H
Protein Properties Length: 789aa    MW: 90435 Da    PI: 6.6198
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g29610genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.82.9e-06504524425
                ---SGGGGTS--TTTTT-SS-S CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                + C +f+  G+C++Gd+C F+H
  Tp4g29610 504 PVCVYFLN-GFCNRGDQCMFSH 524
                67998888.************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF525401.08E-1537220IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS511948.84138208IPR001650Helicase, C-terminal
PfamPF002711.3E-546172IPR001650Helicase, C-terminal
Gene3DG3DSA:3.40.50.3002.5E-552189IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM003561.5E-6500526IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.056500527IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5503525IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-4505527IPR000571Zinc finger, CCCH-type
PfamPF146080.0093506524No hitNo description
SMARTSM003560.0024528554IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.765528555IPR000571Zinc finger, CCCH-type
PfamPF146080.013533552No hitNo description
SuperFamilySSF902298.9E-5533554IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009507Cellular Componentchloroplast
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 789 aa     Download sequence    Send to blast
MSHIVAGLLG VSSDLSAYCP GPSPSSADTE IKPELQNLIH DLILYIHRKE PDIEKSILVF  60
LPTYYSLEQQ WYQLVPFQAS FEVHILHRSI DTERALAAMK ICRSRRKVSL LTFHVSASLH  120
YLCVTIPKVA YVIDSCRSLQ VFWDASRKRD AVQLVWVSRS QAEQRRGRTG RTCDGEVYRL  180
VPSAFFNKLE EHEPRAIVKL SLRQQVLHIC CTESRAINDA NDVIDDALSM LLSMRALRKS  240
PRGRYEPTFY GRLLASFPLS IDASILVVKF GEMGMLREGI LLGVLMDTQP LPINHPFGDD  300
ALFLEYVDHY FGGDSSKTIS GGRREVVLMA NLCAFQFWQR VFKDKHRLEN LKQLLSKEKD  360
KDLKLMFPEI EQEWCDFHNI ARSSFYHVSE MYEDTRSSLH RFRPQFISFS DSLPTYYHPY  420
EFKHTCYVEC QASEDRYPHS EDQPPLEVRK CVSVPFVPPN AFQANAIAKN MANIFKEIRT  480
QGTPSDNSHG AIKPADYVEN GEVPVCVYFL NGFCNRGDQC MFSHTLQSTR PACKFFASLQ  540
GCRNGESCLF SHAMHRQTTP YYSPPSCLPE EDDSSTWPLL DIFPTSSEGC ILVFDDSDMH  600
FTSRIANRYP SWRILSTSSS SETLFCDSSL ADTRIFWGLN HPYQTIISKA GGENPIPWNE  660
VKCVLWFLNP DSYAETPEKQ KTILQNFFEY MAIRILGDAL YEIQVVLTMN NIRFSNLQVE  720
KLARDSFFFL GESFLHNSIS FGEFSDTFTI QKPMLVSRPV SYVFDLHPPT DIQFGDYTSV  780
LHKSLHNNK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g29610
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935970.0AB493597.1 Arabidopsis thaliana At2g47680 mRNA for hypothetical protein, partial cds, clone: RAAt2g47680.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013636005.10.0PREDICTED: zinc finger CCCH domain-containing protein 31
RefseqXP_013691810.10.0DExH-box ATP-dependent RNA helicase DExH8-like
SwissprotO222430.0C3H31_ARATH; DExH-box ATP-dependent RNA helicase DExH8
TrEMBLA0A3P6BEP20.0A0A3P6BEP2_BRAOL; Uncharacterized protein
STRINGBostr.13208s0050.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM896523
Publications ? help Back to Top
  1. Xu R,Zhang S,Huang J,Zheng C
    Genome-wide comparative in silico analysis of the RNA helicase gene family in Zea mays and Glycine max: a comparison with Arabidopsis and Oryza sativa.
    PLoS ONE, 2013. 8(11): p. e78982
    [PMID:24265739]