PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g25140
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 405aa    MW: 45375.6 Da    PI: 6.5218
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g25140genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH57.91.8e-18243289455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 hn  ErrRRdriN+++  L+el+P++     +K +Ka+iL +A++Y+ksLq
  Tp4g25140 243 VHNLSERRRRDRINERMKALQELIPQC-----TKTDKASILDEAIDYLKSLQ 289
                6**************************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.2E-21237297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088819.333239288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.51E-11242293No hitNo description
SuperFamilySSF474594.84E-21242312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-16243289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-19245294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0010161Biological Processred light signaling pathway
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MEHQGWSFEE NYNFPTNRRS IRPQDELVEL LWRDGQVVLQ SQTHREQTQP QTQETLRSNT  60
FLEDQETVSW IQYPPDEDPF ETSDFSSHFF SDVDPLQKPV SETVKHEAGP DPPQVMPPPK  120
FRLAESSSGV RELGKEQYSV VTVGPSHCGS NQSQNDLDVS VSHDRSKTID EKLFPNASSS  180
SGGSSGCSFG KNIKEMATGG SITKDRKRKH IMDTDESVSQ SDAISNKSNK RSGSTRRSRA  240
AEVHNLSERR RRDRINERMK ALQELIPQCT KTDKASILDE AIDYLKSLQL QLQVMWMGSG  300
MAAAASAPMM FPGVQPPPFI RQMQSPVQLP QFPVMGRPAI QNNPGLVCQN PVQNQVFNDR  360
FDRYIGVFPQ MQAASQPVEM LRFGSPAGQQ SQQPPAPTKT TDGPR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1247252ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00606ChIP-seqTransfer from AT2G43010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2516940.0AF251694.1 Arabidopsis thaliana putative transcription factor BHLH9 mRNA, complete cds.
GenBankAK3168980.0AK316898.1 Arabidopsis thaliana AT2G43010 mRNA, complete cds, clone: RAFL09-22-K12.
GenBankAJ4407550.0AJ440755.1 Arabidopsis thaliana mRNA for phytochrome interacting factor 4 (srl2 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010506153.10.0PREDICTED: transcription factor PIF4-like
RefseqXP_010506154.10.0PREDICTED: transcription factor PIF4-like
SwissprotQ8W2F30.0PIF4_ARATH; Transcription factor PIF4
TrEMBLD7LJW80.0D7LJW8_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.4__2461__AT2G43010.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34682561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.20.0phytochrome interacting factor 4