PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g24470
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 337aa    MW: 37219.6 Da    PI: 5.9625
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g24470genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.6e-09204251455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR++iN ++  L+el+P +    +k    a +L + +++++sLq
  Tp4g24470 204 NHSLAERARREKINARMKLLQELVPGC----DKIQGTALVLDEIINHVQSLQ 251
                79************************9....889****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.77E-9198255No hitNo description
SuperFamilySSF474591.44E-15198269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.634200250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-15200268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-6204251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-8206256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MDLTQGFGVS SGAGPCREAV TGLESLNFSD EIRQLVTMPP DNTGSSFTAL LEMPATQAME  60
LLHFAETSCS QATISRVAGD IAPPTLHPFG TLTFPSNPLL LDRAARFSVI AAEQNGYFSG  120
ESIPSNSSAN LVDRVKSEPD ETHSSQQLVS YQMVENQNQN NSSGKRRERG KKVNSSMKKT  180
KSSEEAEKLP YVHVRARRGQ ATDNHSLAER ARREKINARM KLLQELVPGC DKIQGTALVL  240
DEIINHVQSL QRQVEMLSMR LAAVNPRIDF NLDSILASEN GGSLMDGSFN GESYHQLQQW  300
PLDGYHQPEW GREEDHHQAN FLMGSATLHP SQVKMEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0965210.0AY096521.1 Arabidopsis thaliana unknown protein (At2g42300) mRNA, complete cds.
GenBankAY0654110.0AY065411.1 Arabidopsis thaliana unknown protein (At2g42300) mRNA, complete cds.
GenBankAK1766340.0AK176634.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH048), complete cds, clone: RAFL25-17-F11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002879977.10.0hypothetical protein ARALYDRAFT_483321
SwissprotQ8VZ021e-179BH048_ARATH; Transcription factor bHLH48
TrEMBLD7LI390.0D7LI39_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.4__2381__AT2G42300.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25762771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42300.11e-180bHLH family protein