PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g18310
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family B3
Protein Properties Length: 247aa    MW: 28711.6 Da    PI: 6.9281
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g18310genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.74.3e-3238143199
                EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                f+k ltpsdv+k++rlv+pk++ae++        +   e++  l +ede+g+ W+++++y+++s++yvltkGW+++vk+++L++gD+++F++++ +++++
  Tp4g18310  38 FEKPLTPSDVGKLNRLVIPKQHAERYfplaaaaaDA-VEKGLLLCFEDEEGKPWRFRYSYWNSSQSYVLTKGWSRYVKEKHLDAGDVILFHRHRADGGRF 136
                99*****************************99644.46888*************************************************88779999* PP

                EEEEE-S CS
         B3  93 vvkvfrk 99 
                +++++r+
  Tp4g18310 137 FIGWRRR 143
                *****97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-4032151IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.05E-3133144IPR015300DNA-binding pseudobarrel domain
CDDcd100173.88E-2837133No hitNo description
PfamPF023621.2E-2938143IPR003340B3 DNA binding domain
PROSITE profilePS5086314.04338144IPR003340B3 DNA binding domain
SMARTSM010197.8E-2438144IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MSINQYSNDF HYHSLMWQQQ QQQHHHQNDV VEDKEALFEK PLTPSDVGKL NRLVIPKQHA  60
ERYFPLAAAA ADAVEKGLLL CFEDEEGKPW RFRYSYWNSS QSYVLTKGWS RYVKEKHLDA  120
GDVILFHRHR ADGGRFFIGW RRRGDSSSPS DSYRHLQSNA SLQYYPHAGA QAVENQRGNS  180
KTLRLFGVNM ECQLDSDWSE PSTPDGSTTC PTNHDQFHFY PQQHYPPPYY MDISFTGDVH  240
QTRSPQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-473515011128DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1175870.0AK117587.1 Arabidopsis thaliana At2g36080 mRNA for putative RAV2-like DNA binding protein, complete cds, clone: RAFL17-23-G02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013747322.11e-157PREDICTED: B3 domain-containing protein At2g36080-like
SwissprotQ8GYJ21e-155Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLA0A087H3011e-161A0A087H301_ARAAL; Uncharacterized protein
STRINGBra017262.1-P1e-155(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.11e-124B3 family protein