PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g17100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 297aa    MW: 34129.8 Da    PI: 4.8585
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g17100genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.22.6e-07175219655
                HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                +++ r RR+ri ++ +eL +l+P         Kl+ ae+ + A +Y+k Lq
  Tp4g17100 175 SIAARERRRRIAEKTHELAKLIPGgH------KLNTAEMFQAAAKYVKFLQ 219
                567899*****************955......******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.417169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.19E-10170228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-10172228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.7E-5175219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-8175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.02E-4191222No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MSSMDCLSHF FNWDPPIQLQ DCFIPDLDMI IPETDGFFFQ SPPQQQFNQP MFQEEAPSQN  60
LLELTHLDSF CDQFLPSQEI SLPYPKAEIF DETHNLDPFL PTPKRQKLLN SSYHCNTHDH  120
FPSPNLNFFN PYDDLDFIPE ASIFPEFQVP DFPLAFRAGR GDQHVTKKPT LSSQSIAARE  180
RRRRIAEKTH ELAKLIPGGH KLNTAEMFQA AAKYVKFLQS QVGILQMMQT KKKGISDVEI  240
ETQVLLDSQA IQEKLSAEEV CLVPCEMVRN LTSEESIWRN PKISREINKL LSTDLAN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410635.11e-175hypothetical protein EUTSA_v10017751mg
SwissprotQ84RD01e-154BH053_ARATH; Transcription factor bHLH53
TrEMBLV4MHR81e-175V4MHR8_EUTSA; Uncharacterized protein
STRINGBra021933.1-P1e-167(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45472552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.11e-142bHLH family protein