PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g13540
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family TCP
Protein Properties Length: 350aa    MW: 38982.6 Da    PI: 7.1216
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g13540genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.31.4e-3427128189
        TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssaseceaesssssas..nsssg 88 
                a+g+kdrhsk+ T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l  +          +          ss s+ +  n   +
  Tp4g13540  27 ATGRKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLEISqepenittkpG----------SSPSEPNlvN--TQ 114
                589*************************************************************944444432221..........2222222110..11 PP

        TCP  89 .............k 89 
                             k
  Tp4g13540 115 tqfvanldpedamK 128
                11223344443331 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.5E-2828157IPR005333Transcription factor, TCP
PROSITE profilePS5136932.4293088IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGLKGYSVGG DGVGEIVEVQ GGHIIRATGR KDRHSKVFTS KGPRDRRVRL SAHTAIQFYD  60
VQDRLGYDRP SKAVDWLIKK AKSAIDKLEI SQEPENITTK PGSSPSEPNL VNTQTQFVAN  120
LDPEDAMKTF FPATTATTSG GGTNMNFQNY PHHHDDDNIV SRTRTTPNLS QDLGLSLHPF  180
QGNNNNNTVV PETNNFATNH FETFGRISGW NHHDLTMTSS SSPSEQQQQE QERSNGGFMV  240
NHHHHQQPSM MTLLNSQQQQ QVFLGGQQQQ QRGTLQSSLF PHSFRSWDHH HHQTTSDNHH  300
HHNQASPVMF ASSSQFGSHG MMMMQGLSFP IHGEEATQPN SSSSPPNSHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-223588154Putative transcription factor PCF6
5zkt_B4e-223588154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g13540
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530250.0AK353025.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-K11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018434158.10.0PREDICTED: transcription factor TCP10
SwissprotO822771e-154TCP10_ARATH; Transcription factor TCP10
TrEMBLA0A0D3BTA80.0A0A0D3BTA8_BRAOL; Uncharacterized protein
STRINGBo4g053680.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141581924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.11e-113TCP domain protein 10
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  2. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]