PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g11570
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 145aa    MW: 15561.2 Da    PI: 10.7171
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g11570genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.00112749123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               + C+ C+k F++   L  H  +H
  Tp4g11570 27 FACKTCNKEFPSFQALGGHRASH 49
               78**********99999998887 PP

2zf-C2H212.40.000487193123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++Cp+Cg  F     L  H+r+H
  Tp4g11570 71 HECPICGAEFAVGQALGGHMRKH 93
               79********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.28E-82593No hitNo description
PfamPF139126.2E-132651IPR007087Zinc finger, C2H2
SMARTSM003550.232749IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.392754IPR007087Zinc finger, C2H2
PROSITE patternPS0002802949IPR007087Zinc finger, C2H2
PROSITE profilePS501579.0997193IPR007087Zinc finger, C2H2
PfamPF139121.6E-107195IPR007087Zinc finger, C2H2
SMARTSM003550.0637193IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MEMINKMASC LILLSTAHQT ETKSRVFACK TCNKEFPSFQ ALGGHRASHR RSATLQGHAP  60
PSPKRIKPVK HECPICGAEF AVGQALGGHM RKHRKGGGGG RSLGPAPVTM KKSGGGNGKR  120
VLCLDLNLTP VENEDLKLEL GRLIL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0071841e-122AC007184.4 Arabidopsis thaliana chromosome 2 clone T11P11 map mi54, complete sequence.
GenBankCP0026851e-122CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankBT0293301e-122BT029330.1 Arabidopsis thaliana At2g28710 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006409904.11e-92hypothetical protein EUTSA_v10017375mg
SwissprotQ424102e-39ZAT12_ARATH; Zinc finger protein ZAT12
TrEMBLV4M8G01e-92V4M8G0_EUTSA; Uncharacterized protein
STRINGBra011931.1-P2e-90(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.12e-80C2H2 family protein