PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g02320
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family WRKY
Protein Properties Length: 301aa    MW: 32696.9 Da    PI: 10.4902
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g02320genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.11.4e-31225282359
                -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+a+d +++++tYeg+Hnh+
  Tp4g02320 225 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERAADDSSMLIVTYEGDHNHS 282
                99************************988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.6E-15175221IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.6E-33212282IPR003657WRKY domain
PROSITE profilePS5081130.607218284IPR003657WRKY domain
SuperFamilySSF1182907.98E-27221283IPR003657WRKY domain
SMARTSM007741.7E-37223283IPR003657WRKY domain
PfamPF031063.6E-27225281IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MAVELMTRNY ISGVGADSFA VQEAAASGLK SMENFIGLMS RERFNSDQPS SSSSAAVTTT  60
VNLESARNTT ADAAVSKFKR VISLLDRTRT GHARFRRAPV ISPIQEIKPT PSFQAPSQIR  120
RGSFSSPIKT IDFSSLSSLT TESEHMKHHH RPSETAPFGS QSLSTTVSSF SKSTKRRCNS  180
ENLIAGKCAS ASSGRCHCSK KRKIKQKRVI RVPAISAKMS DVPPDDYSWR KYGQKPIKGS  240
PHPRGYYKCS SVRGCPARKH VERAADDSSM LIVTYEGDHN HSLSAADLAG AAVADLILES  300
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-22211283273WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00275DAPTransfer from AT2G23320Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533210.0AK353321.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-29-B06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288916.10.0probable WRKY transcription factor 15
SwissprotO221761e-173WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBLM4ETP20.0M4ETP2_BRARP; Uncharacterized protein
STRINGBra032174.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17152887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.11e-137WRKY DNA-binding protein 15