PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g01740
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 289aa    MW: 32093.9 Da    PI: 9.4205
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g01740genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.54.1e-12114160455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 h  +Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++++k+Lq
  Tp4g01740 114 DHILAERKRREKLTQRFVALSALIPGL-----KKMDKASVLGDAIKHLKHLQ 160
                5899***********************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.161110159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-10114160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-16114173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-16115179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.73E-12115164No hitNo description
SMARTSM003539.8E-15116165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MNSLVGDFPQ SLSSLDDTTT CYNFDASCTD DLVKEKPSKI LKTTHVAPKL HPPPPNTQPF  60
SRILSFEKKG LKVMNQNSPN LIFSHKKEVG SPDLKTRGTK RAQPLTRSQS NAQDHILAER  120
KRREKLTQRF VALSALIPGL KKMDKASVLG DAIKHLKHLQ ESVKEYEEQK KERTLESMVL  180
VKKSVLVLDD DHQLSSSSSD GNRDCSSSNL PEIEVRVSGK DVLIKILCEK QKGHVIKIMG  240
EIEKIGLSIT NSSVLPFGPT FDISIIAQKT SDFEMKVEDV VKSLSCGLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118123ERKRRE
2119124RKRREK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00273DAPTransfer from AT2G22750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ6530150.0DQ653015.1 Arabidopsis thaliana clone 0000017319_0000012121 unknown mRNA.
GenBankDQ4465490.0DQ446549.1 Arabidopsis thaliana clone pENTR221-At2g22750 basic helix-loop-helix family protein (At2g22750) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013746950.10.0PREDICTED: transcription factor bHLH18-like isoform X1
SwissprotQ1PF171e-145BH018_ARATH; Transcription factor bHLH18
TrEMBLA0A078DJZ11e-179A0A078DJZ1_BRANA; BnaC04g35300D protein
STRINGBra030210.1-P1e-178(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.21e-135bHLH family protein