PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g01260
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 260aa    MW: 29624.2 Da    PI: 8.5943
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g01260genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-1969118255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 ykGVr+++ +g+WvAeIr p++   r+r +lg+f taeeAa a+++a+ +++g
  Tp4g01260  69 LYKGVRQRH-WGKWVAEIRLPKS---RTRLWLGTFETAEEAALAYDQAAFQIRG 118
                59******9.**********954...4***********************9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.22E-3268127No hitNo description
SuperFamilySSF541718.5E-2269126IPR016177DNA-binding domain
PROSITE profilePS5103222.5169126IPR001471AP2/ERF domain
SMARTSM003803.7E-3769132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-3269127IPR001471AP2/ERF domain
PRINTSPR003678.8E-117081IPR001471AP2/ERF domain
PfamPF008475.6E-1470118IPR001471AP2/ERF domain
PRINTSPR003678.8E-1192108IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
METTFNFPKS NNSLGFNQSK PLGLNQLTPY QVYQIQNLLN HRRSTISNLS PNRSRMKRFS  60
ASSSKPQKLY KGVRQRHWGK WVAEIRLPKS RTRLWLGTFE TAEEAALAYD QAAFQIRGDI  120
AKLNFPNIRH EDINPLPSSV DAKLQAICQS LRRKTEGSCS VSDKTEGSCS VSDKTEDICS  180
VSDKTEPVLP KTEHTETKFS YKSLRTDENS LSDEYKLESS SSEQGKTFLE FSDTKFDDIG  240
NFELLKFPSV EIDWDAISKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2168126160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15257RSRMKR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g01260
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140335.11e-129PREDICTED: ethylene-responsive transcription factor ERF056
SwissprotQ9SIE41e-123ERF56_ARATH; Ethylene-responsive transcription factor ERF056
TrEMBLM4EN851e-127M4EN85_BRARP; Uncharacterized protein
STRINGBra030255.1-P1e-128(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26802768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22200.11e-115ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]