PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g30190
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 574aa    MW: 65192.6 Da    PI: 5.039
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g30190genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH421.6e-13316361555
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                + ++ErrRR+++N+++  Lr+l+Pk      +Kl+ a+iL  A++Y+k+Lq
  Tp3g30190 316 NLMAERRRRKKLNDRLYALRSLVPKI-----TKLDRASILGDAINYVKELQ 361
                5589*********************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.1E-1711149IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000839.66E-15310363No hitNo description
PROSITE profilePS5088816.59311360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-17314376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-11316361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-16317366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-17318374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MESSSMPNLL EKLRPLVGAR AWDYCVLWRL NEDQRFVKWM GCCCGGTQLI EENGTEEFSF  60
GGCRDVMFHH PRTKSCEFLA HLPSSIPLDS GIYAETLLTN QTGWLSESSE PGFMQETICT  120
RVLVPIPGGL VELFANRHVA EDQNVVDFVT GHCKMLMDET VTINMMVADE VESKPYGMLS  180
GEMHQKGSKD EEIMNLPSPY DISADQIRIN FLPQMSDYEA HQHLKMKSDY NHQALGYLQE  240
NGNKEMMGMN PFNTVGEEGI PVIGEPSLLV NEQQQVTNDK ETNENGDTGS DCSDQIDDED  300
DPKYKKKSGK HSQAKNLMAE RRRRKKLNDR LYALRSLVPK ITKLDRASIL GDAINYVKEL  360
QNEAKELQDE LEENSETEDG SNRQQGGMSL NGTVVTGFHQ GLSCNSNVLN LKQDVDLENS  420
NDKGQEMEPQ VDVAQLDGRE FFVKVICEYK PGGFTKLMEA LDSLGLEVTN ANTTRFLSLV  480
SNVFKVEKND SEMVQAEHVR NSLLEITRNT SRGWHDDQMA TGSMQNEKNE VDYQHYDDHH  540
HHGGHHHLHD HQMNQSAHLH HHHHQQHINH YQNQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1304325KKKSGKHSQAKNLMAERRRRKK
2319326ERRRRKKL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5119910.0AJ511991.1 Brassica napus mRNA for bHLH transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006409372.10.0hypothetical protein EUTSA_v10022620mg
SwissprotQ9ZVX20.0AMS_ARATH; Transcription factor ABORTED MICROSPORES
TrEMBLV4LJU20.0V4LJU2_EUTSA; Uncharacterized protein
STRINGBra002004.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75892741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.10.0bHLH family protein