PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g29570
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 372aa    MW: 42425.4 Da    PI: 5.8502
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g29570genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.2e-09187234455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Tp3g29570 187 SHSLAERVRREKISERMKFLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 234
                8**************************....999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.26E-16181252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.53E-10181238No hitNo description
PROSITE profilePS5088815.586183233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-16183250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-7187234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-8189239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MKRAIASDNI LNLTDKSVLE HQRDRLKCHH SLHQPGYDTS FSTFFSEPIV GSISPNPGFE  60
NVWSGFRFGS LHVSYGEEAE DNKETPSISS ETSRSESFKK MKLESVMGVG ALMEEDDKEQ  120
KNKKMIRRFE NEEDEEEKSK ITEETIGSTK SITKKKKVTK KQQNSSNDSS KNDYIHVRAR  180
RGQATDSHSL AERVRREKIS ERMKFLQDLV PGCNKITGKA GMLDEIINYV QSLQSQIEFL  240
SMKLATVNPR LDFETVNDIL GKEVISEQTT SFTNVVMPSH DMVNSDYVHF NPVQQMVQYS  300
GTEATISDRI WDSEMQNLYT SLGFDQGLLQ LTTFANNSQP FSSDSLLKIR FFLYSFGRLD  360
EHKQLESGDV TF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0053131e-67BT005313.1 Arabidopsis thaliana At4g34530 mRNA, complete cds.
GenBankAY1207411e-67AY120741.1 Arabidopsis thaliana unknown protein (At4g34530:At4g34540) mRNA, complete cds.
GenBankAK1178461e-67AK117846.1 Arabidopsis thaliana At4g34530 mRNA for putative bHLH transcription factor (bHLH063), complete cds, clone: RAFL18-04-K08.
GenBankAF4885961e-67AF488596.1 Arabidopsis thaliana clone bHLH063 putative bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412217.12e-89hypothetical protein EUTSA_v10025748mg
SwissprotQ8GY611e-83BH063_ARATH; Transcription factor bHLH63
TrEMBLV4LSU82e-89V4LSU8_EUTSA; Uncharacterized protein
STRINGBra011540.1-P7e-86(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59472543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.19e-61cryptochrome-interacting basic-helix-loop-helix 1