PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g27630
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family GeBP
Protein Properties Length: 396aa    MW: 44791.6 Da    PI: 9.4142
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g27630genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57357.34.5e-182373032898
     DUF573  28 kspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
                k+p++d  +f e vk+ isf++ +sql+eKir+LK+Kfk++++k    + ++fs++hd  +fe+sk iWgs
  Tp3g27630 237 KHPFEDRIGFQESVKSLISFEFPTSQLIEKIRSLKRKFKRNESK----EVVTFSRPHDLICFEISKEIWGS 303
                48999**************************************9....999******************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.4E-14233302IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MRQNDSKLTS EEHEELVKTP TEIVAVSVAG KQASGLDNET EKITYVVKSK KNKKRSKKEA  60
HTSAAVALPK KKSKTMEKPS SEEEEQVRME EEESGGEHKE PVETSTEIVA VSVVGKQASG  120
SDTETEKIAS VSKSKKNKKR SKKRKTMEEP PSEQEEQIVA VSVAGKQASG SENETEKIAS  180
VAKSKQNKKR WKKEAHTSAA VALSKKKSKS MEESPSKEED YTEEEEESAK QRRKLMKHPF  240
EDRIGFQESV KSLISFEFPT SQLIEKIRSL KRKFKRNESK EVVTFSRPHD LICFEISKEI  300
WGSKVDKEKE KEDKEEDKEE EGEGDGSFEN SFLVGKVASF DLGEKTVKKG WSLVPKERKK  360
KIEQKLKLFE KEANKFVMVK IDIVHDVVSA IAEYTS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134142KKNKKRSKK
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66420.14e-15DNA-binding storekeeper protein-related transcriptional regulator