PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g18680
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 463aa    MW: 50199.6 Da    PI: 6.7769
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g18680genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.38.5e-063543921154
                HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 R +++ ++++ L++l+ +      +K + a++L +A+eYIk L
  Tp3g18680 354 VRKEKMGDRIAALQQLVSPF-----GKTDAASVLSEAIEYIKFL 392
                5778999***********98.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.735343392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0075349398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-11353407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.17E-6353397No hitNo description
Gene3DG3DSA:4.10.280.109.3E-10357401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MGDHHDFINS GSWWKVSSSS STSSSSSMRA SSIESGGSAV FHDKLHHHSL ATDHHLQMIG  60
LGLSSQSPVD QWNQSLLRGD SKAETSFGVM LQENLNLDAT SNANANTTSS TTSYHLQESD  120
SSHHHQALWR DPQINNNNDF KPQLNMTSNN RGFFLDHQFS PHGSSSTDSS TVTCQGFSVD  180
NSSNTLYGAA ATATPNSSSA MFHHQQHQGA GFSLPGSSDQ QPSRNHQQSN LGYSQFGSST  240
GNYDQMATAL PSTWFLRSSP PKPHSPLRFS NNATFWNPAA SAGNAGPTHH DASSNFFPAL  300
QPPQIHAPSF DEQPKSISEI RDSSSNEVKR GGGDQPATKR AKSEAASPSP AFKVRKEKMG  360
DRIAALQQLV SPFGKTDAAS VLSEAIEYIK FLHQQVSALS NPYMKSGASL QHQQSDHPKE  420
LEVSEEPDLR SRGLCLVPVS STFPVTHDTT VDFWTPTFGG TFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0085800.0BT008580.1 Arabidopsis thaliana clone U50947 unknown protein (At3g20640) mRNA, complete cds.
GenBankAK1180540.0AK118054.1 Arabidopsis thaliana At3g20640 mRNA for putative bHLH transcription factor (bHLH123), complete cds, clone: RAFL19-30-D14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009145606.10.0PREDICTED: transcription factor bHLH123 isoform X2
SwissprotQ8GXT30.0BH123_ARATH; Transcription factor bHLH123
TrEMBLM4F3W10.0M4F3W1_BRARP; Uncharacterized protein
STRINGBra035761.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40242553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.10.0bHLH family protein