PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g17550
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 266aa    MW: 28605.7 Da    PI: 5.9579
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g17550genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH130.000191541941055
                HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                + R +r+ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  Tp3g17550 154 KVRKERLGERISALQQLVSPF-----GKTDAASVLHEAMGYIKFLQ 194
                567789999*********998.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.788144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-11151204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-7152200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.81E-5154198No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MGDFAEDQDD GAMVEAAGAT SFSELLMLSD GVLSSSDHHR HDNSGDGGED SFGFVFSGST  60
NGSRMLCFSG DCQNDDESLF LEPSLLSGVS VSDPSCTINT SKNSNDVFTD DKSTKALNKK  120
KRTGSVNGRN MDDNRKSSKK CNRNQDKSSV GITKVRKERL GERISALQQL VSPFGKTDAA  180
SVLHEAMGYI KFLQDQIQVL CSPYLINYSL DGGVVTGDVR PGKKVRDLRS RGLCLVPVSS  240
TVHVESSNGA DFWSPATMGH TKSPSQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009145780.11e-157PREDICTED: transcription factor bHLH113 isoform X1
SwissprotQ9LT671e-141BH113_ARATH; Transcription factor bHLH113
TrEMBLA0A078I5R41e-157A0A078I5R4_BRANA; BnaA05g20570D protein
TrEMBLM4E0Y11e-157M4E0Y1_BRARP; Uncharacterized protein
STRINGBra022428.1-P1e-156(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74022234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.11e-142bHLH family protein