PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g16630
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family TCP
Protein Properties Length: 451aa    MW: 51836.6 Da    PI: 7.5314
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g16630genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1264e-391533202135
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssasec....e 74 
                + ++drhski T++g RdRR+Rls+++a+++F Lqd+LGfdk+skt+eWLl+qakp+i++++++                       s +++s+     +
  Tp3g16630 153 PSRTDRHSKIKTAKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPEIIKIANSlsshfnhggfssgeesqtrpalgSMDTSSDLrelaS 252
                5799************************************************************999999998887777766655553333333322232 PP

        TCP  75 aesssssasnsssg....................kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135
                                                  + ++   k+k  q ++    +l+k+ rakar+ra++rt ekm+++ +
  Tp3g16630 253 -------------MwtvedrgsnnnttetggnkvDGRSMRGKRKMLQPRTPILKKLSKDARAKARERAKDRTMEKMMKRRS 320
                .............02222222223344667778844444445555666666669**********************99865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-40154317IPR005333Transcription factor, TCP
PROSITE profilePS5136931.724155213IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.467297314IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MNNNKTFSTT STINEDYMLF PYNDNHSSQP LLPFSPSSSI NDILIHSNSN TSNTHLDHHH  60
HQQFLQAPSP FSQFVPDFAL LASFLPQNNG HNDNQTFTTN DHHHHHYPSL LPLNNPIGES  120
QLLEPSETIT THIEDSQRIS TSQDPKMKKV KKPSRTDRHS KIKTAKGTRD RRMRLSLDVA  180
KELFGLQDML GFDKASKTVE WLLTQAKPEI IKIANSLSSH FNHGGFSSGE ESQTRPALGS  240
MDTSSDLREL ASMWTVEDRG SNNNTTETGG NKVDGRSMRG KRKMLQPRTP ILKKLSKDAR  300
AKARERAKDR TMEKMMKRRS QVNVVEDEEA HNHHDKVVKN NKSNVNWTYS FEATPFEDEI  360
EELRKNDHFA VCNEFVVNKK DHISDESYDM INKWNSSFPM LNQHRSQGAA TSVEQHQFTD  420
VHHYLEKPRD FMYNYHKCAD IYPFTVNFSS E
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents axillary bud outgrowth and delays early axillary bud development. Indirectly required for the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924, ECO:0000269|PubMed:17452340}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g16630
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during environmentally induced bud dormancy (planting density). Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269|PubMed:17307924}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018439441.10.0PREDICTED: LOW QUALITY PROTEIN: transcription factor TCP18-like
SwissprotA1YKT10.0TCP18_ARATH; Transcription factor TCP18
TrEMBLA0A398ARF00.0A0A398ARF0_BRACM; Uncharacterized protein
STRINGBo1g117490.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72692742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.11e-156TCP family protein
Publications ? help Back to Top
  1. Lewis JM, et al.
    Overexpression of the maize Teosinte Branched1 gene in wheat suppresses tiller development.
    Plant Cell Rep., 2008. 27(7): p. 1217-25
    [PMID:18392625]
  2. Niwa M,Endo M,Araki T
    Florigen is involved in axillary bud development at multiple stages in Arabidopsis.
    Plant Signal Behav, 2013. 8(11): p. e27167
    [PMID:24305631]
  3. González-Grandío E,Cubas P
    Identification of gene functions associated to active and dormant buds in Arabidopsis.
    Plant Signal Behav, 2014. 9(2): p. e27994
    [PMID:24518068]
  4. Stes E, et al.
    Strigolactones as an auxiliary hormonal defence mechanism against leafy gall syndrome in Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(16): p. 5123-34
    [PMID:26136271]
  5. Yao C,Finlayson SA
    Abscisic Acid Is a General Negative Regulator of Arabidopsis Axillary Bud Growth.
    Plant Physiol., 2015. 169(1): p. 611-26
    [PMID:26149576]
  6. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  7. Seale M,Bennett T,Leyser O
    BRC1 expression regulates bud activation potential but is not necessary or sufficient for bud growth inhibition in Arabidopsis.
    Development, 2017. 144(9): p. 1661-1673
    [PMID:28289131]
  8. Otori K,Tamoi M,Tanabe N,Shigeoka S
    Enhancements in sucrose biosynthesis capacity affect shoot branching in Arabidopsis.
    Biosci. Biotechnol. Biochem., 2017. 81(8): p. 1470-1477
    [PMID:28471323]
  9. Lantzouni O,Klermund C,Schwechheimer C
    Largely additive effects of gibberellin and strigolactone on gene expression in Arabidopsis thaliana seedlings.
    Plant J., 2017. 92(5): p. 924-938
    [PMID:28977719]
  10. Yang Y, et al.
    The TIE1 transcriptional repressor controls shoot branching by directly repressing BRANCHED1 in Arabidopsis.
    PLoS Genet., 2018. 14(3): p. e1007296
    [PMID:29570704]