PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g05620
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family M-type_MADS
Protein Properties Length: 175aa    MW: 19946.5 Da    PI: 9.5564
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g05620genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.61.8e-191157349
               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
               ++++  +qvtfskRr g++KKA+EL +LC+aev +++fs+ +k y +
  Tp3g05620 11 VQDTNTKQVTFSKRRLGLFKKASELATLCNAEVGIVVFSPGNKPYSF 57
               6788899*********************************9998877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.44E-25173IPR002100Transcription factor, MADS-box
SMARTSM004323.1E-32160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.105161IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-18323IPR002100Transcription factor, MADS-box
PfamPF003193.5E-231157IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-182338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-183859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MGRRKIKMEK VQDTNTKQVT FSKRRLGLFK KASELATLCN AEVGIVVFSP GNKPYSFGKP  60
NFDLIAERFK NDSEDSDSSE KSGSSRGNRA RQEKKTCKRL NSIIEEVESE KKRGESLQNL  120
LESAGEERFN KPIEELSLEE LMEFEAKMKN MHRGIQNNIN QMQASSSLMF LSNDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-16178178MEF2 CHIMERA
6byy_B1e-16178178MEF2 CHIMERA
6byy_C1e-16178178MEF2 CHIMERA
6byy_D1e-16178178MEF2 CHIMERA
6bz1_A1e-16178178MEF2 CHIMERA
6bz1_B1e-16178178MEF2 CHIMERA
6bz1_C1e-16178178MEF2 CHIMERA
6bz1_D1e-16178178MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g05620
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407920.11e-102agamous-like MADS-box protein AGL29
SwissprotO647038e-67AGL29_ARATH; Agamous-like MADS-box protein AGL29
TrEMBLV4MA981e-101V4MA98_EUTSA; Uncharacterized protein
STRINGXP_006407920.11e-102(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G66656.19e-80AGAMOUS-like 91
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]