PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g29570
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 215aa    MW: 23623.8 Da    PI: 8.727
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g29570genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.32.1e-1699145455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 hn  E+rRR+riN+++  L++l+P++      K +Ka++L +A+eY+k+Lq
  Tp2g29570  99 FHNLSEKRRRSRINEKMKALQKLIPNS-----NKTDKASMLDEAIEYLKQLQ 145
                6*************************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.09895144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-1499145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.09E-1999166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.29E-17100149No hitNo description
Gene3DG3DSA:4.10.280.101.0E-19100153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-18101150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010047Biological Processfruit dehiscence
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MSNSDDGDRL PPPSSSDELS TILRQILSRT PTTQPSSPPK KIVSSGEMFD LTFPFVSGGA  60
VSTAVYAVAE SGEDKCAFEN KRNGARQRNS LKRNIDAQFH NLSEKRRRSR INEKMKALQK  120
LIPNSNKTDK ASMLDEAIEY LKQLQLQVQT LAAMNGLGLN PMRLPPVLPP TQTRINGTLE  180
QELNLDTLLG GSHSLVNSEP PEATQQMCFS TATLL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR7272401e-164FR727240.1 Lepidium campestre mRNA for ALCATRAZ-like protein (alc gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393909.11e-130hypothetical protein EUTSA_v10004889mg
SwissprotQ9FHA21e-117ALC_ARATH; Transcription factor ALC
TrEMBLV4K0421e-130V4K042_EUTSA; Uncharacterized protein
STRINGfgenesh2_kg.8__2705__AT5G67110.11e-117(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139821724
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67110.11e-108bHLH family protein