PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g24120
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 378aa    MW: 42360.8 Da    PI: 6.7292
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g24120genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.21.2e-17152201255
                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                r +h++ E+rRR++iN++f+ Lr+l+P++    ++K +Ka+ L +++eYI+ Lq
  Tp2g24120 152 RSKHSATEQRRRSKINDRFQMLRQLIPNS----DQKRDKASFLLEVIEYIHFLQ 201
                889*************************9....9******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.9E-23147213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-19148215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.939150200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.44E-14152204No hitNo description
PfamPF000103.3E-15152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.6E-14156206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MFTVSQASSN ERNGAEDSIS NCSSYAANSG FTLWDESLEK KGHTRKQIAR DRANIRDAAG  60
AMGQWQGMEQ RSSFSSRSSL QTSGVKSQRQ SFMDMLKSAK GSSQEDDLDD DDEEEFVTKK  120
GDNTSTSQCQ RVDLKVKLDR KGGNEQKPNT PRSKHSATEQ RRRSKINDRF QMLRQLIPNS  180
DQKRDKASFL LEVIEYIHFL QEKVDKQESN HQQPPEGTVP VLTEAEAVDM DHHQCLLNRA  240
IETTSFPVSG QIESSQLCPV SSSDGAAMED EKLREEEEEE ELSVHKGTIS ISSVYSQGLL  300
KTLSETLQTS GVDLSRSSIS VQIKLSKQPQ KFIGGFDLGR KVEMKTKTMT RTVTSRRHGN  360
KRNSKKTTAS ETYNGETE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533133e-62AK353313.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-34-P07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013700835.11e-141PREDICTED: transcription factor BIM1-like isoform X2
SwissprotQ9LEZ38e-84BIM1_ARATH; Transcription factor BIM1
TrEMBLM4EKN71e-140M4EKN7_BRARP; Uncharacterized protein
STRINGBra029354.1-P1e-139(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1880578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.14e-81bHLH family protein