PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g23870
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family TCP
Protein Properties Length: 257aa    MW: 27383.5 Da    PI: 10.1499
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g23870genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.84.5e-39352212121
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............ 88 
                a+kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++   + s   +s+ +s+            
  Tp2g23870  35 AVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStA-SVSIRGSSTTNSTsstctlsssldh 133
                789*************************************************************9999977742.2222222222222356777777888 PP

        TCP  89 ......................................................kaaksaa.kskksqksaasalnlakesrakarar 121
                                                                      + a++++  ++++q+++a+al l+++++++a + 
  Tp2g23870 134 kpllgsspfilgkrvradedsgggkdetmgsfatpagfwavparpdfgqvwsfaAGAPQEMfLQQQQQQQPAAALFLHQQQQQQAAMG 221
                8889999999999999999999999999999999999999999999999999995556666689999999998999999777776654 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.8924195IPR017887Transcription factor TCP subgroup
PfamPF036344.4E-3441197IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MSNNTDGVMI SNGAIIERQR QQQQQQQQSS DGALAVKKPP AKDRHSKVDG RGRRIRMPII  60
CAARVFQLTR ELGHKSDGQT IEWLLRQAEP SIIAATGTGT TPASFSTASV SIRGSSTTNS  120
TSSTCTLSSS LDHKPLLGSS PFILGKRVRA DEDSGGGKDE TMGSFATPAG FWAVPARPDF  180
GQVWSFAAGA PQEMFLQQQQ QQQPAAALFL HQQQQQQAAM GEASAARVGN YLPGHLNLLA  240
SLSGGAPGSG RRDDDPR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g23870
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024007014.11e-142transcription factor TCP7
RefseqXP_024007015.11e-142transcription factor TCP7
RefseqXP_024007016.11e-142transcription factor TCP7
RefseqXP_024007017.11e-142transcription factor TCP7
SwissprotQ9FMX21e-119TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A1J3E1H41e-161A0A1J3E1H4_NOCCA; Transcription factor TCP7 (Fragment)
STRINGXP_006394596.11e-141(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17822685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.12e-68TCP family protein