PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g23200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family WRKY
Protein Properties Length: 302aa    MW: 34497.1 Da    PI: 6.6794
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g23200genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.84.6e-28120181159
                ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                ldDg++WrKYGqK++ g++fpr+YYrCt++   +C+++k+v+rs+e+p ++ei+Y+g H+++
  Tp2g23200 120 LDDGFSWRKYGQKDILGAKFPRGYYRCTYRksqECEATKQVQRSDENPMFFEIIYRGIHTCS 181
                59***************************98889**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.5E-26118182IPR003657WRKY domain
SuperFamilySSF1182902.09E-24119182IPR003657WRKY domain
SMARTSM007745.7E-40120182IPR003657WRKY domain
PROSITE profilePS5081120.059120178IPR003657WRKY domain
PfamPF031066.7E-26121180IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009751Biological Processresponse to salicylic acid
GO:0010193Biological Processresponse to ozone
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MERKNNSGEW EKMKKEINEL MTEGRDYAHQ LKSQLGSSSS QESREHLTKK ILESYHKSLT  60
IMNYSGQLDV QVSPHSHGGG SPKSDDSDQE PHIIKSSKKS MPRWTEKVRI APGVGIDRTL  120
DDGFSWRKYG QKDILGAKFP RGYYRCTYRK SQECEATKQV QRSDENPMFF EIIYRGIHTC  180
SQTANVRSTI PVQTQEHENL EIAKESLDYN HHQTLHHPLS STPNLESNNV MLQLEDQNID  240
FFGSTSFSND LGTNVNYDFL ASHDVGSVSQ STSNSPSIVP LESPFESFDP NHLFGRFGRF  300
YH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00525DAPTransfer from AT5G24110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300470.0KF430047.1 Brassica rapa WRKY transcription factor 30 (WRKY30) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394669.11e-177hypothetical protein EUTSA_v10004616mg
SwissprotQ9FL621e-155WRK30_ARATH; Probable WRKY transcription factor 30
TrEMBLV4K2091e-177V4K209_EUTSA; Uncharacterized protein
STRINGfgenesh2_kg.6__2402__AT5G24110.11e-166(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125951928
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.11e-139WRKY DNA-binding protein 30