PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g21270
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family M-type_MADS
Protein Properties Length: 219aa    MW: 25213.2 Da    PI: 10.077
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g21270genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.28.9e-181049241
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                ien+s r+ tf kR+ g+lKKA+EL +LCd+ +avii s
  Tp2g21270 10 YIENESSRKSTFKKRKRGLLKKAYELGTLCDVPIAVIIGS 49
               59***********************************977 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.736149IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-24160IPR002100Transcription factor, MADS-box
CDDcd002663.95E-15285No hitNo description
SuperFamilySSF554554.45E-23295IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-13323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-171149IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-132338IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-133859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MTRHKVKMAY IENESSRKST FKKRKRGLLK KAYELGTLCD VPIAVIIGSA YEASPEVWPS  60
REAAEKVVSQ WKMMSVMEKS KKMVNQETYL QQRISKATET CRKLWKENKE LRMKEIMFDC  120
FSGKTSPSRI EKTDLRDFGS VIEQYLKDLN RRVEILKRNE GSSSSSSVPA AATTTVVMPL  180
VEMGSSSAGF YDKIREQIEI NLNLKQPEVK DLDLNQKQW
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g21270
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010421527.11e-111PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK39e-54AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLS6B3Z01e-108S6B3Z0_TURGL; Agamous-like MADS-box protein AGL35
STRINGXP_010421527.11e-110(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26630.11e-84M-type_MADS family protein
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]