PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g19980
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family G2-like
Protein Properties Length: 403aa    MW: 44872.8 Da    PI: 5.9123
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g19980genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.56.1e-33232286155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                k+r+rWtpeLHe+Fveav+qLGGse+AtPk++l+l++ +gLt++hvkSHLQkYR+
  Tp2g19980 232 KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYRT 286
                79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.486229289IPR017930Myb domain
SuperFamilySSF466893.23E-17230286IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-30230288IPR009057Homeodomain-like
TIGRFAMsTIGR015575.6E-23232286IPR006447Myb domain, plants
PfamPF002497.7E-11234285IPR001005SANT/Myb domain
PfamPF143791.5E-21320366IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MTLANDFGYS TAMSSSFSAL HTTAEDRYRK LSNSFWSSSG QELMNNPVPH QVLSGGNSGG  60
YLFSSPSGFC NVSAVSTHGR SSQIQPHVSA LPSGRLAMQD CLLEAESPSL TNYHPQEFTD  120
PLEEFFDFSD HVPVPNPQAE SSVVRVVSSV VSHEKSEWQT WADQLISVDD GSEPNWSELL  180
GDPSPHNPNS QIPIPSSDVP RQEIIANQQH QVVSLEEKLS ARNSSVCAAT SKQRMRWTPE  240
LHEAFVEAVN QLGGSERATP KAVLKLLNNP GLTIYHVKSH LQKYRTARYK PETSEATGEA  300
QGKKMTSIED IKSLDMKTSV EITQALRLQM EVQKRLHEQL EIQRSLQLQI EKQGRYLQRM  360
FEKQEKLQEN KSSSPEVEFV LGTQTGDQTG SASASRKRSR EED
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00532DAPTransfer from AT5G29000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002874462.10.0myb family transcription factor
SwissprotQ8GUN50.0PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBLD7M7060.0D7M706_ARALL; Myb family transcription factor
STRINGfgenesh2_kg.6__2806__AT5G29000.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85627117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.20.0G2-like family protein