PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g18920
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 500aa    MW: 54838.2 Da    PI: 6.3672
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g18920genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.6e-08321368455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Tp2g18920 321 SHSLAERVRREKIGERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 368
                8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.09E-9315372No hitNo description
SuperFamilySSF474592.75E-16315381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.37317367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-16317382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-5321368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-10323373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MDNELFMNTE LPPPPEMPVH FEPPSSSSAM LNWALLDPNL ARNSPPQDCF MWEKSTELQQ  60
QQSIFDSALS SLVSSPTPSS SNFSGGGGDG FIIRELIGKL GNIGNSSGEI YGAPMGNNNG  120
KVSRSGSCYA TPMSSPPPMM NRTTPLTEFS GDPGFAERAA RFSCFGSRSF NGRTNAGLPV  180
NNGKIINSGK LTRVSSTPAL NALVSPEFAS ASRPMIPAGD PTPKLAGEFS RKRKSVSKAK  240
SKENPLSNAS PSPNFSQTAE RKEDWDGKGS KASEEKGAKR RREDEDEEEE EEGNKSNNTK  300
PPEPPKDYIH VRARRGQATD SHSLAERVRR EKIGERMKLL QDLVPGCNKV TGKALMLDEI  360
INYVQSLQRQ VEFLSMKLSS VNDTRLEFNV DALVSKDVMI PSSSKGLHEL QSESLTHHNY  420
NNNSQLHTNI SSNSMMLQSP MNSMETSSLA RSFTHLPTLT QFTDSISQYQ MFSEEDLQSI  480
VGMGVAHNPN HESQNMKIEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229234SRKRKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00036PBMTransfer from AT5G48560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0056371e-159BT005637.1 Arabidopsis thaliana clone U20245 unknown protein (At5g48560) mRNA, complete cds.
GenBankBT0029451e-159BT002945.1 Arabidopsis thaliana clone RAFL14-96-A17 (R20245) unknown protein (At5g48560) mRNA, complete cds.
GenBankAF4886101e-159AF488610.1 Arabidopsis thaliana clone bHLH078 putative bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013593917.10.0PREDICTED: transcription factor bHLH78
RefseqXP_013593916.10.0PREDICTED: transcription factor bHLH78
SwissprotQ9FJL40.0BH078_ARATH; Transcription factor bHLH78
TrEMBLA0A0D3DBT10.0A0A0D3DBT1_BRAOL; Uncharacterized protein
STRINGBra037478.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23322775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48560.10.0bHLH family protein