PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g15870
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 498aa    MW: 53545.1 Da    PI: 5.0295
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g15870genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.4e-11314356754
                HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  Tp2g15870 314 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 356
                79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.866307356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.02E-16310377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-9313356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-14313362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-15314369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.04E-13314360No hitNo description
CDDcd048732.13E-6427487No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MVLDGNGGAV WLGGGGGERV QEEENEEASW GRNQDDGGAS LSHFKPMLEG DWFSNPPHPQ  60
DLQMLQSQQD FRFLGGFPFN PNDSLLLHQS IDSSSSCSPS QAFSLDPSQT SFLAANNKSC  120
LLNVPSSTNP FDNAFEFGSD SGFLGQIQAP ISMGFGSLTQ LGNRELSSVP DFLSARSLLP  180
PENNNTTPLC GGGGGFTPLE LEGFGSPANG GFVGNRAKVL KPLEVLASSG AQPTLFQKRA  240
AMRQSSGSKI GNSESSGMRK LSDDGEMDET GIEVSGLNYE SDELNEGGKA AESIQNGGGV  300
GKGKKKGMPA KNLMAERRRR KKLNDRLYML RSVVPKISKM DRASILGDAI DYLKELLQRI  360
NDLHNELEST PPGSLPPTSS SFHPLTPTPQ TLSCRVKEEL CPSSLPSPKG QQARVEVRLR  420
EGRAVNIHMF CGRRPGLLLA TMKALDNLGL DVQQAVISCF NGFALDIFRA EQCQEGQEIL  480
PDQIKAVLFD TAGYTGMI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1303321KKKGMPAKNLMAERRRRKK
2315322ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN8493730.0JN849373.1 Isatis tinctoria cultivar Songlan 1 inducer of CBF expression 1 protein (ICE1) mRNA, complete cds.
GenBankFJ5457260.0FJ545726.1 Eutrema salsugineum ICE-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395527.10.0hypothetical protein EUTSA_v10004059mg
SwissprotQ9LSE20.0ICE1_ARATH; Transcription factor ICE1
TrEMBLD2DHG70.0D2DHG7_EUTSA; ICE-like protein
TrEMBLD7R8220.0D7R822_EUTHA; Inducer of CBF expression 1
STRINGfgenesh2_kg.5__441__AT3G26744.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19522782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.40.0bHLH family protein