PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g05480
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family TCP
Protein Properties Length: 407aa    MW: 43367.3 Da    PI: 6.3446
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g05480genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.81.1e-35532213122
        TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............. 88 
                ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++  ++s +s++s+ s +             
  Tp2g05480  53 VAKRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPANFSsLSVSLRSNGSTLSTPpsksvplygalgl 152
                689*****************************************************************99877777777777555556667778888888 PP

        TCP  89 ............................kaaksaa.kskksqksaasalnlak..esrakarar....a 122
                                            +++++++ +++++q+ +++  +     es +++r r    +
  Tp2g05480 153 shhhhqyeeqggafgahtppllgfhhhlQQQQQHHqNQNQNQRLDQTPAETIPdgESFSRKRYRsvdlS 221
                888888889999999999999888766522222222333333222222222221222233333322332 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.6E-4557225IPR005333Transcription factor, TCP
PROSITE profilePS5136928.41158112IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MDLPDGAATA RGGGSRQLVD ASLSIVPRST SLEDAALTTT SSAAAAATTS GVVAKRSTKD  60
RHTKVDGRGR RIRMPALCAA RVFQLTRELG HKSDGETIEW LLQQAEPAIV AATGTGTIPA  120
NFSSLSVSLR SNGSTLSTPP SKSVPLYGAL GLSHHHHQYE EQGGAFGAHT PPLLGFHHHL  180
QQQQQHHQNQ NQNQRLDQTP AETIPDGESF SRKRYRSVDL SKENDDEEQN ENKSLKESES  240
PAAATTAPMW AVAPTSRSAG GNTFWMLPVP TTTANQQAAV ESSSNNNRAH MWPFGVGAGA  300
GAGAATHFMA GTGFSFPMDQ YRGSSLQLGS FLAQPQQPNQ NLGLSMPDTN LGVLAALNAA  360
YSRGANANAN ANAEQVNNAV EHKQQQQQQQ QSDQDDDSRD ENSNSDE
Functional Description ? help Back to Top
Source Description
UniProtCan specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g05480
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009113333.10.0PREDICTED: transcription factor TCP8
SwissprotQ9C5180.0TCP8_ARATH; Transcription factor TCP8
TrEMBLA0A1J3H9R60.0A0A1J3H9R6_NOCCA; Transcription factor TCP8
STRINGBra027886.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102182433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.11e-124TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]