PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g28280
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 619aa    MW: 67281 Da    PI: 4.9101
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g28280genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.5e-12447492454
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  Tp1g28280 447 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAIAYINEL 492
                799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.1E-5764248IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.111443492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-17444515IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.19E-14446493No hitNo description
PfamPF000105.1E-10447492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-17447513IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.6E-16449498IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009269Biological Processresponse to desiccation
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009963Biological Processpositive regulation of flavonoid biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0043619Biological Processregulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051090Biological Processregulation of sequence-specific DNA binding transcription factor activity
GO:2000068Biological Processregulation of defense response to insect
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MTDYRLQPAM NLWTTDDNAS MMEAFMSSSD ISALWAPATA TTSETAPAPA MEIPAPAGFN  60
QETLQQRLQA LIEGTQEGWT YAIFWQPSYD FSGASVLGWG DGYYKGEEDK GKPRQRSTPP  120
PFSTPADQEY RKKVLRELNS LISGGAGPAD DAVEEEVTDT EWFFLVSMTQ SFACGSGLAG  180
KAFSTATAVW VSGSDHLSGS GCERAKQGGV FGMQTIACIP SANGVVELGS TEQIRQSSDL  240
MNKVRILFNF DGGAGDLSGL NWNFDPDQGE NDPSMWINDP IGVPEQSNGA PSSSSQLLSK  300
SIQFENGGSS STITENPNSD PTPSPVHSQT QNPKFNNNFS RELNFSTSST TLVKPRSGEI  360
LSFGDDGKRG SGNPDPSSYS GQTQFENKRK KSTGLSDEKV LSFGGDKTGG GESDHSDLEA  420
SVVKEVPEKR PKKRGRKPAN GREEPLNHVE AERQRREKLN QRFYALRAVV PNVSKMDKAS  480
LLGDAIAYIN ELKLKVNTTE TEKTQIKNQL EEVKMELAGR KANAGGDLSS SSSMMAIKPV  540
GMEIEVKIIG WDAMIRVESS KRNHPAARLM SALMDLELEV NHASMSVVND LMIQQATVKM  600
GFRIYTQEQL RASLISKIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A4e-73592514195Transcription factor MYC3
4rs9_A4e-73592514195Transcription factor MYC3
4rqw_B4e-73592514195Transcription factor MYC3
4rqw_A4e-73592514195Transcription factor MYC3
4ywc_B8e-7382442227Transcription factor MYC3
4ywc_A8e-7382442227Transcription factor MYC3
4rru_A8e-7382442227Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1428436KRPKKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00084PBMTransfer from AT1G32640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4238030.0EF423803.1 Brassica oleracea var. gemmifera MYC mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415166.10.0hypothetical protein EUTSA_v10007075mg
SwissprotQ392040.0MYC2_ARATH; Transcription factor MYC2
TrEMBLV4KQI00.0V4KQI0_EUTSA; Uncharacterized protein
STRINGBra010178.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12652896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.10.0bHLH family protein