PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g23970
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 252aa    MW: 28687.2 Da    PI: 6.4249
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g23970genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.2e-111772171055
                HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                r+RR++iN+++ +L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Tp1g23970 177 RKRREKINERLKTLQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 217
                9******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.123167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-14169231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-13172226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-12173222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.19E-11176221No hitNo description
PfamPF000101.8E-8177217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MDVFVDGELE SLLGMFNFDH CSSSKEERPR DEMLGLSSLY NDHLHHHQNN VLSSDQHAFL  60
IPDMFPFGAM PGGNLPTMLD SWDQNQFQET ATLKRKQLNI ENTNSNSDVT RQELVKAKKK  120
QRVSPESNTV DESNINWRDG QSQSNSSDDE KASVTSVKGK TRATKGTATD PQSLYARKRR  180
EKINERLKTL QNLVPNGTKV DISTMLEEAV HYVKFLQLQI KLLSSDDLWM YAPLAYNGLD  240
MGFHHNLLSR LM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176181RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0854360.0AY085436.1 Arabidopsis thaliana clone 151587 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415733.11e-175hypothetical protein EUTSA_v10009862mg
SwissprotQ8LEG11e-160BH054_ARATH; Transcription factor bHLH54
TrEMBLV4MQV21e-175V4MQV2_EUTSA; Uncharacterized protein
STRINGBra010921.1-P1e-172(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41322257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.11e-151root hair defective 6-like 4