PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g22900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 226aa    MW: 25903.1 Da    PI: 6.5197
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g22900genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.72.5e-09117164455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR++iN+++  L++l+P +     k +  a +Le  ++Y++sLq
  Tp1g22900 117 SHSLAERVRREKINERLKCLQDLVPGC----YKTMGMAVMLEVIIDYVRSLQ 164
                8*************************9....355999*************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.16E-16111180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.79E-12111168No hitNo description
Gene3DG3DSA:4.10.280.101.9E-16113175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.612113163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6117164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-9119169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:2000488Biological Processpositive regulation of brassinosteroid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MARFEPYSYN IGLNPLFNPL SQINQNPELT NLDSPVSTPS SFMLFSNGTL VDAHHNNSHF  60
SPTLFHGNTR IKGKREESGS KRRRKRSEEE ESLNEDDIQK PRDVVHVRAK RGQATDSHSL  120
AERVRREKIN ERLKCLQDLV PGCYKTMGMA VMLEVIIDYV RSLQNQIEFL SMKLSAASAY  180
YDLNSLDIEP TDTFQGWNMY SAEEMERILR ENVGTQPPNF SSTLPF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4462890.0DQ446289.1 Arabidopsis thaliana clone pENTR221-At1g25330 basic helix-loop-helix family protein (At1g25330) mRNA, complete cds.
GenBankAY0888850.0AY088885.1 Arabidopsis thaliana clone 98716 mRNA, complete sequence.
GenBankAK1757570.0AK175757.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH075), complete cds, clone: RAFL22-31-M12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627373.11e-141PREDICTED: transcription factor bHLH75
SwissprotA4D9981e-130BH075_ARATH; Transcription factor bHLH75
TrEMBLA0A078HE871e-141A0A078HE87_BRANA; BnaA08g19410D protein
STRINGBra010993.1-P1e-140(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM140812024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.11e-124bHLH family protein