PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g22650
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family RAV
Protein Properties Length: 371aa    MW: 40907.2 Da    PI: 9.8719
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g22650genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.81.1e-1264112155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s++kGV   + +grW A+I++      ++r++lg+f  +eeAa+ ++ a+++++g
  Tp1g22650  64 SKFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAAASYDIAARRFRG 112
                79****9888.8*********3.....5*************************98 PP

2B3101.93.6e-32196306196
                EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                f+k+ tpsdv+k++rlv+pk++ae+h                 ++++++ + led++g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v F+++
  Tp1g22650 196 FEKAVTPSDVGKLNRLVIPKQHAEKHfplpamttttvatatTPSPTKGVLINLEDRTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVCFERS 295
                89****************************999999999885567799**************************************************87 PP

                SSSEE..EEEE CS
         B3  86 grsefelvvkv 96 
                  ++++l++ +
  Tp1g22650 296 TGTDRQLYIDW 306
                66777777765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.79E-2564119No hitNo description
SuperFamilySSF541713.27E-1664120IPR016177DNA-binding domain
PfamPF008478.4E-764112IPR001471AP2/ERF domain
PROSITE profilePS5103219.45465120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-1965120IPR001471AP2/ERF domain
SMARTSM003809.6E-2865126IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.1E-40191313IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-31195307IPR015300DNA-binding pseudobarrel domain
CDDcd100171.17E-29195304No hitNo description
SMARTSM010191.6E-25196310IPR003340B3 DNA binding domain
PfamPF023623.1E-29196306IPR003340B3 DNA binding domain
PROSITE profilePS5086313.902196310IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048573Biological Processphotoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MDYSCIDEST SNTSESLSIS TPSAKNKLSP PPALRLYRMG SGGSSVVLDL DNGVETESRK  60
LPSSKFKGVV PQPNGRWGAQ IYEKHQRVWL GTFNEEEEAA ASYDIAARRF RGRDAVTNFK  120
SPATDGTDAE SAFLEAHSKA EIVDMLRKHT YADELQQSKR KFLDGDGNGR RCGSMTTAMI  180
NSLGKDGVST AREVLFEKAV TPSDVGKLNR LVIPKQHAEK HFPLPAMTTT TVATATTPSP  240
TKGVLINLED RTGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKNLRAGDVV CFERSTGTDR  300
QLYIDWKVRS GTEQTTPVQT VVRLFGVNIF SATTNAKPNG VVAECGGKKR SREVDLFALG  360
CSKKQAIINA L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A7e-5919331311121DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00024PBMTransfer from AT1G25560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g22650
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013637910.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription repressor TEM1-like
SwissprotQ9C6M50.0RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A0D3CD610.0A0A0D3CD61_BRAOL; Uncharacterized protein
TrEMBLA0A3P6F7T50.0A0A3P6F7T5_BRAOL; Uncharacterized protein
STRINGBo5g043120.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.10.0RAV family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  3. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  4. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  5. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  6. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]