PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g21830
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 94aa    MW: 10722.9 Da    PI: 9.249
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g21830genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.2e-0820601454
               HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
               d+i +   +L++l+P++ + +s K+s + +L+++++YI++L
  Tp1g21830 20 DQISDLVTKLQQLIPELRRRRSDKVSASKVLQETCNYIRNL 60
               68999999********889********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.2E-8475IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.41660IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-92078IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-62060IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MSSRRSSRSR QSGTSRISDD QISDLVTKLQ QLIPELRRRR SDKVSASKVL QETCNYIRNL  60
HREVDDLSDR LSDLLASTDD NSAEAAIIRS LLNY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0046861e-132BT004686.1 Arabidopsis thaliana At1g26948 gene, complete cds.
GenBankAK1191101e-132AK119110.1 Arabidopsis thaliana mRNA for unknown protein, complete cds, clone: RAFL21-46-D20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013690768.11e-45PREDICTED: transcription factor PRE6-like
RefseqXP_013595899.11e-45PREDICTED: transcription factor PRE6
SwissprotQ8GW328e-47PRE6_ARATH; Transcription factor PRE6
TrEMBLA0A078GTH81e-45A0A078GTH8_BRANA; BnaC07g12550D protein
TrEMBLA0A0D3D6W81e-45A0A0D3D6W8_BRAOL; Uncharacterized protein
STRINGAT1G26945.12e-44(Arabidopsis thaliana)
STRINGfgenesh2_kg.1__2658__AT1G26945.12e-44(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.11e-34bHLH family protein