PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g16760
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family M-type_MADS
Protein Properties Length: 387aa    MW: 44760.7 Da    PI: 6.9782
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g16760genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.81.2e-221963145
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
               kr e++ nrqvt+skR+ gilKKA+ELS+LCd+++ +++fs+tg+
  Tp1g16760 19 KRLESTGNRQVTYSKRKSGILKKAKELSILCDIDIVLLMFSPTGR 63
               6889***************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-301170IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.7261171IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-2612105IPR002100Transcription factor, MADS-box
CDDcd002665.47E-271292No hitNo description
PRINTSPR004042.0E-181333IPR002100Transcription factor, MADS-box
PfamPF003191.9E-192265IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-183348IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-184869IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MLIRSEISQR MGRVKLKIKR LESTGNRQVT YSKRKSGILK KAKELSILCD IDIVLLMFSP  60
TGRPTIFHGE HSCIEEVISK FAQLTPQERT KRKLESLEAL KKTFKKLDHD VNIHEFLGAR  120
WLKPLLTLTT RQGLSNQVAI FQAQVMECHR RLSCWTNIDR IENTEHLNLL EESLRKSIER  180
IQIHKEHYRK NQLLPIECTT TQFHSGIQLP LAIGGNNSMQ EAHTMSWLPD NDNQQTILHG  240
DSSFLPHREM DVLIPVYSNC FFESTKQEDQ MCRNPGKTFE QLEQQGNGCL GLQQIGEEYS  300
YPTPFGTTLG MEEDQEKKIK SEMDMNNMQQ QQQQQQDPSS MYDSTVNNGG CYQIPHDQSI  360
FATDHHHHQN WVSDSVFGQT SYNQQLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-1311102190Myocyte-specific enhancer factor 2B
1tqe_Q1e-1311102190Myocyte-specific enhancer factor 2B
1tqe_R1e-1311102190Myocyte-specific enhancer factor 2B
1tqe_S1e-1311102190Myocyte-specific enhancer factor 2B
5f28_A1e-1311102190MEF2C
5f28_B1e-1311102190MEF2C
5f28_C1e-1311102190MEF2C
5f28_D1e-1311102190MEF2C
6c9l_A1e-1311102190Myocyte-specific enhancer factor 2B
6c9l_B1e-1311102190Myocyte-specific enhancer factor 2B
6c9l_C1e-1311102190Myocyte-specific enhancer factor 2B
6c9l_D1e-1311102190Myocyte-specific enhancer factor 2B
6c9l_E1e-1311102190Myocyte-specific enhancer factor 2B
6c9l_F1e-1311102190Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g16760
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0941160.0AB094116.1 Arabidopsis thaliana At1g18750 mRNA for MADS-box protein, partial cds.
GenBankAY1431720.0AY143172.1 Arabidopsis thaliana MADS-box protein AGL65 (AGL65) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013660239.10.0agamous-like MADS-box protein AGL65
SwissprotQ7X9I00.0AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBLM4EQH80.0M4EQH8_BRARP; Uncharacterized protein
STRINGBra031049.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59332543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.10.0AGAMOUS-like 65
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]